Those in Black join your team. 
Those in Orange are available for that stage, then leave. 
Those in Blue have special requirements. Check the [[../Secrets|Secrets]] page for more details. 
Those in Red previously joined, but from this point, are rendered unusable. Those lost permanently are marked so, while others rejoin later on. 
Those in Green are upgrades for units already in your party.
==Stages 01 - 09==
*'''Note 1:''' The acquisition of either protagonist is mutually exclusive for each route. If one protagonist was chosen, the other protagonist will not join the Player Team; said protagonist will still appear throughout the story, but they will be travelling separately from the Player Team.
*'''Note 2:''' If you are playing on a New Game+ mode, you will automatically be able to select between ZEUTH route and ZAFT route after stage 47 (both routes).
*'''Note 3:''' "Ally Unit battles Enemy Unit" means a squad with the ally unit set as leader battles the squad with the enemy unit inside, but the ally unit does not need to deal damage to, or even target the enemy unit. For example, if the ally unit squad uses a Centre-Formation series of single target attacks on an enemy unit squad subordinate, the condition is still met. If the battle occurs during Enemy Phase, choosing Defend or Evade will still meet the condition. Using MAP attacks, support attacks and support defenses will '''not''' meet the condition.
*'''Note 4:''' "Have Ally Unit persuade Enemy Unit" means having a squad with the ally unit set as leader move directly next to the enemy unit, and then use the Persuade ({{Ruby|説得|せっとく}}) special option on the enemy unit.
*'''Note 5:''' Some secrets may require SR Points to be accumulated:
**Gaia Gundam (Stella)
**Gaplant (Four)
**Saving Aki
**ZEUTH Route
**(Tiffa)
**G-Bits attack for Gundam X and Gundam Double X
**Chaos Caper (Ziene) & Shurouga (Asakim)

{| width="70%"
|- class="fc-route-h"
| width=50%" |'''Setsuko Route'''
| width=50%" |'''Land Route'''

|-
| class="fc-route3" |'''{{Ruby|第１話|だい１わ}}：ザ･ライトスタッフ Scenario 1 - The Right Stuff'''
| class="fc-route4" |'''{{Ruby|第１話|だい１わ}}：さすらいの{{Ruby|修理屋|しゅうりや}} Scenario 1 - The Wandering Mechanics'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) Reduce Gundam Mk-II or Rick Dias (Quattro) below 4000 HP. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Defeat either Gundam Mk-II or Rick Dias (Quattro). Both retreat below 4000 HP. '''Secret Requirements:'''
*You must be playing as Setsuko to unlock the following secrets.
**Flying Armor Crash attack for Gundam Mk-II [Early]
**Gundam Mk-II [Black]
**Dijeh
**Great Booster attack for Great Mazinger [Early]
**Gaplant (Four)
**Gaia Gundam (Stella)
**Bolinoak Sammahn (Sarah Zabiarov) & Palace Athene (Reccoa)
'''Route-Exclusive Bazaar Units:'''
*You must be playing as Setsuko to purchase the Asshimar from the Bazaar.
'''Unit Acquisition:'''
*Virgola Unit 1 (Denzel)
*Virgola Unit 2 (Toby)
*Virgola Unit 3 (Setsuko)

|'''Victory Condition:''' Defeat Promeus (Geraba). '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Defeat all enemies within turn 4 player phase. '''Secret Requirements:'''
*You must be playing as Land to unlock the following secrets.
**Plasma Gimmick & O-Thunder attacks & Powerups for Big O [Early]
**Xabungle [Unit 2]
**(Yassaba)
***(The Rushrod is not exclusive to Land route.)
**All Secret Enhancement Parts - Hero's Mark, Shadow Angel Feather, Spirit of Steel, Haro
**Spearhead (Charles) & Spearhead (Ray)'s assistance in the final battle (Normal or better ending)
**Shurouga (Asakim)'s assistance in the final battle (Normal or better ending)
'''Route-Exclusive Bazaar Units:'''
*You must be playing as Land to purchase the following units from the Bazaar.
**Government
**Mexbrute
'''Unit Acquisition:'''
*Gunleon (Land, Mel)
**Mel's ????? will be revealed and become the "SP Recovery" skill upon reaching level 50.
*Gundam X (Garrod) [base unit]
**Divider [Exchangeable parts]
**Gundam X Divider form [using Divider parts]
**(Gundam X's Satellite Cannon parts are not available, meaning Gundam X can only be in Gundam X Divider form until later in the game.)
'''Unit Acquisition (post-stage):'''
*Gatchiko (Gain)

|-
| class="fc-route3" |'''{{Ruby|第２話|だい２わ}}：{{Ruby|怒れる|おこれる}}{{Ruby|瞳|ひとみ}} Scenario 2 - Angry Eyes'''
| class="fc-route4" |'''{{Ruby|第２話|だい２わ}}：{{Ruby|旅立ち|たびだち}}の{{Ruby|日|ひ}} Scenario 2 - Day of Departure'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) ["Escape from colony" (コロニーから{{Ruby|脱出|だっしゅつ}}する) option] Defeat Sword Impulse Gundam or Zaku Warrior (Alex), or all allies reach the escape point / ["Subdue the hijacked Gundams" ({{Ruby|強奪|ごうだつ}}されたガンダムを{{Ruby|取り押さえる|とりおさえる}}) option] Defeat either Chaos Gundam, Abyss Gundam, or Gaia Gundam. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Defeat all enemies within 2 turns. '''Secret Requirements:'''
*ZEUTH Points +1
**Choose to "Subdue the hijacked Gundams".
'''Unit Acquisition ("Subdue the hijacked Gundams" option only):'''
*Sword Impulse Gundam (Shinn)
*Zaku Warrior (Alex)
'''Unit Acquisition (post-stage):'''
*Impulse Gundam (Shinn) [base unit]
**Blast Silhouette [Exchangeable parts]
**Blast Impulse Gundam form [using Blast Silhouette parts]
*Blaze Zaku Phantom (Rey)
*Gunner Zaku Warrior (Lunamaria)
*Minerva (Talia, Arthur, Meyrin)

|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Defeat Dogozzo (Adette) (retreats below 3000 HP). '''Secret Requirements:'''
*Rushrod (Yassaba) requirement:
**Gainer, Gain, Sara, Gauli, Bello, and Adette must have a combined kill count of 100 or more by the end of Scenario 18 (Gallia route).
'''Unit Acquisition:'''
*King Gainer (Gainer)
*Panther (Sara)
*Panther (Gauli)
*Panther (Bello)

|-
| class="fc-route3" |'''{{Ruby|第３話|だい３わ}}：{{Ruby|二つ|ふたつ}}の{{Ruby|世界|せかい}} Scenario 3 - Two Worlds'''
| class="fc-route4" |'''{{Ruby|第３話|だい３わ}}：{{Ruby|掟破り|おきてやぶり}}の{{Ruby|助っ人達|すけっとたち}} Scenario 3 - Lawbreaking Helpers'''

|-
|'''Victory Condition:''' (1) Defeat the Girty Lue or Exus; (2) Reduce the Alexandria below 10000 HP.'''Victory Condition (includes hidden):''' (1) Defeat the Girty Lue or Exus or 5th turn is reached; (2) Reduce the Alexandria below 10000 HP. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship, or any of the Virgola units is defeated. '''SR Point:''' Defeat the Girty Lue within 4 turns. Alternatively, defeat Chaos Gundam, Abyss Gundam, and Gaia Gundam, then defeat Exus within 4 turns. '''Secret Requirements:'''
*Gaia Gundam (Stella) Points +1
**Defeat Gaia Gundam (Stella).
*Gundam Mk-II [Black] (1/1):
**Do not defeat Gundam Mk-II (Emma). If met, Amuro will join with the black Gundam Mk-II later in the game. See Pacific Division route stage 18 and Gallia route stage 19 for further details. If not met, Amuro will join with a red Rick Dias [Unit 2].
*Dijeh requirement:
**Kamille, Quattro, Bright, Emma, Reccoa, Apolly, Roberto, Amuro, and Katz must have an '''average''' level of 25 or more by the end of Scenario 25.
'''Unit Acquisition:'''
*Impulse Gundam gains two more forms via exchangeable parts:
**Force Silhouette [Exchangeable parts]
**Force Impulse Gundam form [using Force Silhouette parts]
**Sword Silhouette [Exchangeable parts]
**Sword Impulse Gundam form [using Sword Silhouette parts]
*Impulse Gundam can use Tactical Reload (requires Minerva to be on the map).
*Gundam Mk-II (Kamille)
*Rick Dias [Red] (Quattro)
*Rick Dias (Apolly)
*Rick Dias (Roberto)
*Argama (Bright, Torres, Saegusa)
(The above units are temporarily ally NPCs for 1 turn) 
'''Unit Acquisition (post-stage):'''
*All units except for the Glory Star leave. Glory Star refers to:
**Virgola Unit 3 (Setsuko)
**Virgola Unit 1 (Denzel)
**Virgola Unit 2 (Toby))
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Rushrod.'''Victory Condition (includes hidden):''' (1) Defeat the Buffalo or 4th turn is reached; (2) Defeat Rushrod. '''Defeat Condition:''' (1) Gatchiko or Panther (Sara) is defeated; (2) King Gainer or Panther (Sara) is defeated; (3) The Iron Gear is defeated. '''SR Point:''' Defeat the Buffalo by turn 3 player phase. '''Unit Acquisition:'''
*Walker Gallia (Jiron, Chill)
*Xabungle (Rag)
*Trad 11 (Blume)
*Trad 11 (Dike)
*Iron Gear (LS)/Iron Gear (WM) (Elche, Cotset, Fatman)
*King Gainer gains the "Overskill Attack" attack and the "Overskill" ability.
'''Unit Acquisition (post-stage):'''
*Custom squad formations are now available.

|-
| class="fc-route3" |'''{{Ruby|第４話|だい４わ}}：{{Ruby|異星人|いせいじん}}{{Ruby|襲来|しゅうらい}} Scenario 4 - Alien Invasion'''
| class="fc-route4" |'''{{Ruby|第４話|だい４わ}}：それぞれの{{Ruby|旅|たび}},それぞれの{{Ruby|事情|じじょう}} Scenario 4 - Respective Journeys, Respective Circumstances'''

|-
|'''Victory Condition:''' (1) Defeat the King of Vega; (2) Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Reduce the King of Vega below 10000 HP or 4th turn is reached; (2) Defeat all enemies. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Reduce the King of Vega below 10000 HP within 3 turns. '''Unit Acquisition:'''
*Grendizer/Spazer (Duke)
*Double Spazer (Kouji)
*Drill Spazer (Maria)
*Marine Spazer (Hikaru)
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Rushrod.'''Victory Condition (includes hidden):''' (1) Battle Galapagos (Horla) or defeat 5 or more enemy squads or 3rd turn is reached; (2) Defeat Rushrod. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) The Iron Gear is defeated. '''SR Point:''' Defeat all other enemies, then defeat Rushrod by turn 5 player phase. '''Unit Acquisition:'''
*TRI attacks (Tri-Charge) become available for your squad units. They require the unit to be the leader of a TRI formation squad, and there are 3 units in the squad.

|-
| class="fc-route3" |'''{{Ruby|第５話|だい５わ}}{{Ruby|目覚め|めざめ}}の{{Ruby|日|ひ}} Scenario 5 - Day of Awakening'''
| class="fc-route4" |'''{{Ruby|第５話|だい５わ}}：ムーン・ライダーズ Scenario 5 - Moon Riders'''

|-
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' After enemy reinforcements arrive, defeat all enemies within 3 turns. '''Secret Requirements:'''
*Aki Point requirement:
**By the end of Scenario 6, Kappei's kill count must be at least 5.
'''Unit Acquisition:'''
*Zambo Ace/Zambird (Kappei)
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship is defeated. '''SR Point:''' Clear the map within 3 turns. '''Unit Acquisition:'''
*Nirvash (Eureka)
*Terminus 909 (Holland)
*Terminus 606 (Matthieu, Stoner)
*Terminus 808 (Hilda)
*Gekkougou (Talho, Happ, Kengou)

|-
| class="fc-route3" |'''{{Ruby|第６話|だい６わ}}：{{Ruby|超重神|ちょうじゅうしん}}{{Ruby|降臨|こうりん}} Scenario 6 - Descend, Super Gravity God'''
| class="fc-route4" |'''{{Ruby|第６話|だい６わ}}：{{Ruby|祭り|まつり}}の{{Ruby|夜|よる}}に Scenario 6 - The Night of the Festival'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Dicreel within 3 turns after God Gravion appears. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Any ally unit is defeated, or 4 turns pass after God Gravion appears. '''SR Point:''' Defeat all enemies within 2 turns. '''Secret Requirements:'''
*Aki Points +1
**Kappei's kill count must be at least 5 by the end of this stage.
'''Unit Acquisition:'''
*Gran Kaiser (Touga)
*Gran Kaiser can transform into God Gravion (Touga, Eiji, Runa, Mizuki, Eina, ???)
*TRI attacks (Tri-Charge) become available for your squad units. They require the unit to be the leader of a TRI formation squad, and there are 3 units in the squad.

|'''Victory Condition:''' Defeat Wodom (Pou). '''Defeat Condition:''' The Iron Gear or ∀ Gundam is defeated. '''SR Point:''' Defeat all other enemies, then defeat Wodom (Pou) by turn 3 player phase. '''Unit Acquisition:'''
*∀ Gundam (Loran) aka Turn A Gundam

|-
| class="fc-route3" |'''{{Ruby|第７話|だい７わ}}：{{Ruby|月光|げっこう}}、{{Ruby|怒り|いかり}}に{{Ruby|染めて|そめて}} Scenario 7 - Moonlight, Tainted by Rage'''
| class="fc-route4" |'''{{Ruby|第７話|だい７わ}}：{{Ruby|月|つき}}の{{Ruby|女神|めがみ}} Scenario 7 - Goddess of the Moon'''

|-
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Defeat 2 enemies within 2 turns.
'''Unit Acquisition:'''
*Kuuraiou (Toshiya)
*Zambo Ace/Zambird (Kappei) becomes Zambot 3 (Kappei, Uchuuta, Keiko).
*God Gravion sub-pilot ??? is revealed as Leele.
*Gran Kaiser gains the "Gran Knights Attack" attack.
*God Gravion gains the "Gravity Crescent" attack.
'''Unit Acquisition (post-stage):'''
*King Beal (Heizaemon, Gengorou, Ichitarou)
*Gundam Mk-II (Kamille)
*Rick Dias [Red] (Quattro)
*Rick Dias (Apolly)
*Rick Dias (Roberto)
*Argama (Bright, Torres, Saegusa)
*Nemo (Emma)
*Nemo (Reccoa)
*Force/Sword/Blast Impulse Gundam (Shinn)
*Blaze Zaku Phantom (Rey)
*Gunner Zaku Warrior (Lunamaria)
*Minerva (Talia, Arthur, Meyrin)

|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat the Almaiya.'''Victory Condition (includes hidden):''' (1) Battle Gundam Virsago CB or Gundam Ashtaron HC, or defeat 2 or more enemy squads, or 3rd turn is reached; (2) Battle Gundam Virsago CB or Gundam Ashtaron HC, or defeat 3 or more enemy squads in total, or the next turn is reached; (3) Defeat the Almaiya. '''Defeat Condition:''' (1) ∀ Gundam is defeated; (2) The Iron Gear or ∀ Gundam is defeated. '''SR Point:''' Defeat Gundam Virsago CB, Gundam Ashtaron HC, and SUMO Gold Type within 6 turns. '''Secret Requirements:'''
*Tiffa & G-Bits Points +1
**Defeat Jenice Kai Enil Custom (Enil).
*Tiffa & G-Bits Points +1
**Defeat either Gundam Virsago CB (Shagia) or Gundam Ashtaron HC (Olba).
*Spirit of Steel (1/6) + (2/6)
**Defeat either Gundam Virsago CB (Shagia) or Gundam Ashtaron HC (Olba).
**Buy the Silver Accessory (シルバーアクセ) from the Bazaar.
'''Unit Acquisition:'''
*Kapool (Sochie)
*Kapool (Miashei)
*∀ Gundam gains the "Gundam Hammer", "Beam Saber", and "Beam Rifle (Rapid Fire)" attacks, +20 EN, +5 Mobility, and Sword Equipment + Shield Equipment characteristics.

|-
| class="fc-route3" |'''{{Ruby|第８話|だい８わ}}：{{Ruby|世界|せかい}}の{{Ruby|終わる|おわる}}{{Ruby|時|とき}} Scenario 8 - The End of the World'''
| class="fc-route4" |'''{{Ruby|第８話|だい８わ}}：{{Ruby|天翅|てんし}}の{{Ruby|記憶|きおく}} Scenario 8 - Angel Memories'''

|-
|'''Victory Condition:''' Defeat all GINN High Maneuver Type IIs.'''Victory Condition (includes hidden):''' (1) Defeat all GINN High Maneuver Type IIs. (2) Defeat GINN High Maneuver Type II (Sato). '''Defeat Condition:''' Ally battleship, or Gundam Mk-II, or Impulse Gundam is defeated; any GINN High Manuver Type II reaches the marked line. '''SR Point:''' Clear the map within 6 turns. '''Secret Requirements:'''
*ZEUTH Points +1
**Have Alex's Zaku Warrior defeat Sato's GINN High Maneuver Type II.
*Flying Armor Crash attack for Gundam Mk-II [Early] (1/1)
**Defeat Galbaldy Beta (Lila). Kamille's Gundam Mk-II will use Flying Armor Crash to defeat Lila's Galbaldy Beta again in an event. If not met, the attack will be gained after the stage.
*Aki Points +5
**Defeat the Bandock (Butcher).
*Dijeh requirement:
**Kamille, Quattro, Bright, Emma, Reccoa, Apolly, Roberto, Amuro, and Katz must have an '''average''' level of 25 or more by the end of Scenario 25.
'''Unit Acquisition:'''
*Zaku Warrior (Alex)
*Gundam Mk-II gains the "Flying Armor Crash" attack
*Minerva (Talia) cannot move
'''Unit Acquisition (post-stage):'''
*Gundam Mk-II gains the "Flying Armor Crash" attack (if not unlocked during the stage)
*All units except for the Glory Star leave. Glory Star refers to:
**Virgola Unit 3 (Setsuko)
**Virgola Unit 1 (Denzel)
**Virgola Unit 2 (Toby))
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) The Iron Gear or Aquarion is defeated. '''SR Point:''' Defeat all enemies within 3 turns. '''Secret Requirements:'''
*Hero's Mark (1/5) + (2/5)
**Sortie Jiron as the main pilot in any unit. Have Jiron's unit and Apollo's Solar Aquarion defeat at least one enemy each.
**Buy the Smoked Lizard (トカゲのくんせい) from the Bazaar.
'''Unit Acquisition:'''
*Aquarion Luna (Reika, Sirius, Glenn) (later, the pilots are re-organized, and the unit changes to Solar Aquarion)
*Solar Aquarion/Aquarion Mars/Aquarion Luna (Apollo, Sirius, Sylvia) aka Aquarion
*Borjarnon (Gavane)
*SUMO Gold Type (Harry)
*Iron Gear (Elchi) temporarily cannot move
|-
| class="fc-route3" |'''{{Ruby|第９話|だい９わ}}：{{Ruby|時空|じくう}}{{Ruby|破壊|はかい}} Scenario 9 - Dimension Crash'''
| class="fc-route4" |'''{{Ruby|第９話|だい９わ}}：{{Ruby|世界|せかい}}の{{Ruby|終わり|おわり}}の{{Ruby|日|ひ}} Scenario 9 - The Day the World Ends'''

|-
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Clear the map within 3 turns. '''Unit Acquisition:'''
*Bronco II (Kei)
*Bronco II (Olson)
*Denzel moves to Virgola Unit 3, Setsuko moves to Virgola Unit 1
*Virgola Unit 3 (Denzel)
**All upgrades on Virgola Unit 3 are refunded
**All PP obtained by Denzel is transferred to Setsuko
'''Unit Acquisition (post-stage):'''
*All units leave

|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' The Iron Gear or Aquarion is defeated. '''SR Point:''' Clear the map within 4 turns. '''Unit Acquisition:'''
*Solar Aquarion (Apollo) (all pilot sets) gains the "Mugen Punch" attack.
'''Unit Acquisition (post-stage):'''
*All units leave
|}

==Stages 10 - 15==
{| width="70%"
|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第１０話|だい１０わ}}：ブレイク・ザ・ワールド Scenario 10 - Break the World'''
|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Defeat all enemies or 4th turn is reached; (2) Defeat all enemies. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Defeat all enemies within 3 turns. '''Unit Acquisition:'''
*Bronco II (Kei)
*M.Lover Maaie (Maaie)
*M.Lover Lieea (Lieea)
*Groma (Shaiya, Mimsy)
(The above units are upgradable in the post-stage intermission)
<hr>
*Windam (Neo)
*Chaos Gundam (Sting)
*Abyss Gundam (Auel)
*Gaia Gundam (Stella)

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第１１話|だい１１わ}}：パラダイム・シフト Scenario 11 - Paradigm Shift'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Beck Victory Deluxe; (2) Defeat Mummy. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' After enemy reinforcements arrive, defeat all other enemies before defeating Mummy within 3 turns. '''Unit Acquisition:'''
*Big O (Roger) (upgradable in post-stage intermission)
*Protagonist's unit: Either Virgola Unit 1 (Setsuko) or Gunleon (Land)

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第１２話|だい１２わ}}：ブルースカイ・フィッシュ Scenario 12 - Blue Sky Fish'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Defeat the Federation Army Aerial Battleship, or 5th turn is reached; (2) After Titans arrive, defeat all enemies, or 3 turns pass. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship or Nirvash is defeated. '''SR Point:''' After the Messala arrives, defeat it within 2 turns. '''Secret Requirements:'''
*Dijeh requirement:
**Kamille, Quattro, Bright, Emma, Reccoa, Apolly, Roberto, Amuro, and Katz must have an '''average''' level of 25 or more by the end of Scenario 25.
'''Unit Acquisition:'''
*Nirvash (Eureka, Renton [joins mid-stage])
*Terminus 909 (Holland)
*Terminus 808 (Hilda)
*Terminus 606 (Matthieu, Stoner)
*Gekkougou (Talho, Happ, Kengou)
(The above units are upgradable in the post-stage intermission)
<hr>
*Gundam Mk-II (Kamille)
*Rick Dias [Red] (Emma)
*Methuss/Methuss (MA) (Reccoa)
*Hyaku Shiki (Quattro)
*Rick Dias (Apolly)
*Rick Dias (Roberto)
*Argama (Bright, Torres, Saegusa)
*Impulse Gundam (Shinn) [base unit]
**Force Silhouette [Exchangeable parts]
**Force Impulse Gundam form [using Force Silhouette parts]
**Sword Silhouette [Exchangeable parts]
**Sword Impulse Gundam form [using Sword Silhouette parts]
**Blast Silhouette [Exchangeable parts]
**Blast Impulse Gundam form [using Blast Silhouette parts]
**Impulse Gundam can use Tactical Reload (requires Minerva to be on the map).
*Blaze Zaku Phantom (Rey)
*Gunner Zaku Warrior (Lunamaria)
*Minerva (Talia, Arthur, Meyrin)
*Virgola Unit 1 gains the "Jack Carver" attack (Playing as Setsuko only)
'''Unit Acquisition (post-stage):'''
*Nemo (No Pilot) x2
|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第１３話|だい１３わ}}：{{Ruby|立ち上がれ|たちあがれ}}、{{Ruby|宇宙|うちゅう}}の{{Ruby|戦士|せんし}}！ Scenario 13 - Stand Tall, Warrior of Space!'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' King Beal, or Kuuraiou/God Sigma is defeated. '''SR Point:''' Clear the map within 4 turns. '''Secret Requirements:'''
*TFO [Early] (1/3) + (2/3)
**Have Kouji's Double Spazer get hit (receive at least 10 damage) at least once.
**Buy the Fragment of Chougoukin New Z ({{Ruby|超合金|ちょうごうきん}}NZのかけら) from the Bazaar.
*Enhancement Parts Duplication Glitch
**After the stage, equip the protagonist's unit with enhancement parts.
'''Unit Acquisition:'''
*Double Spazer (Kouji)
*Drill Spazer (Maria)
*Zambot 3 (Kappei, Uchuuta, Keiko)
*King Beal (Heizaemon, Gengorou, Ichitarou)
*Gran Kaiser/God Gravion (Touga, [God Gravion only] Eiji, Runa, Mizuki, Leele, Eina)
*Kuuraiou (Toshiya)
*Kuuraiou (Toshiya) becomes God Sigma (Toshiya, Julie, Kiraken).
*Units from the last stage are unavailable for this stage except for the protagonist's unit.
'''Unit Acquisition (post-stage):'''
*Units from the last stage are unavailable for the post-stage intermission except for the protagonist's unit.
|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第１４話|だい１４わ}}：{{Ruby|集う|つどう}}{{Ruby|異邦人|いほうじん}}たち Scenario 14 - The Gathering Strangers'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Wodom (Poe) and Eagail (Corin); (3) Defeat Wodom (Poe), Eagail (Corin), and either Gundam Virsago CB or Gundam Ashtaron HC.'''Victory Condition (includes hidden):''' (1) Defeat 4 enemy platoons, or defeat any named enemy unit (Jenice Kai Enil Custom, Wodom (Poe), or the protagonist's unit), or 3rd turn is reached; (2) After Corin returns, battle Wodom (Poe) or Eagail (Corin), or the next turn is reached; (3) Defeat Wodom (Poe), Eagail (Corin), and either Gundam Virsago CB or Gundam Ashtaron HC. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship or ∀ Gundam is defeated. '''SR Point:''' Clear the map by turn 6 player phase. '''Secret Requirements:'''
*Enhancement Parts Duplication Glitch (1/1)
**Defeat the protagonist's unit within 2 turns, and you will obtain one additional copy for each enhancement part equipped. This is much easier to do on Setsuko route than on Land route.
*Tiffa & G-Bits Points +1 (Setsuko Route starts here)
**Have Garrod persuade Enil.
*Tiffa & G-Bits Points +1
**Do not defeat Jenice Kai Enil Custom (Enil).
*Rushrod (Yassaba) requirement: (Setsuko Route starts here)
**Gainer, Gain, Sara, Gauli, Bello, and Adette must have a combined kill count of 100 or more by the end of Scenario 18 (Gallia route).
'''Unit Acquisition:'''
*Freeden (Jamil, Sarah, Tonya, Shingo)
*Gundam Airmaster Burst (Witz)
*Gundam Leopard Destroy (Roybea)
*Bertigo (Caris)
*Gundam X (Garrod) [base unit]
**Divider [Exchangeable parts]
**Gundam X Divider form [using Divider parts]
**(Gundam X's Satellite Cannon parts are not available, meaning Gundam X can only be in Gundam X Divider form until later in the game.)
*King Gainer (Gainer)
*Gatchiko (Gain)
*Panther (Gauli)
*Panther (Sara)
*Panther (Bello)
*Walker Gallia (Jiron, Chill)
*Xabungle (Rag, Blume)
*Trad 11 (Dike)
*Iron Gear (LS)/Iron Gear (WM) (Elche, Cotset, Fatman)
*∀ Gundam (Loran) aka Turn A Gundam
*Kapool (Sochie)
*Kapool (Miashei)
*Borjarnon (Gavane)
*Borjarnon (Joseph)
*Units from the last two stages are unavailable for this stage except for the protagonist's unit.
*The protagonist's unit is temporarily forced to join the enemy team.
'''Unit Acquisition (post-stage):'''
*Trad 11 (No pilot)
*Units from the last two stages are unavailable for the post-stage intermission except for the protagonist's unit.
|-
| colspan="2" class="fc-std-sc" style="background:#9ACD32"| '''{{Ruby|第１５話|だい１５わ}}：{{Ruby|見えない|みえない}}{{Ruby|明日|あした}}へ Scenario 15 - To an Unseen Tomorrow'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Ishkick Commander (Henry); (2) Defeat Windam (Neo); (3) Defeat the Bandock or the Elder Battleship; (4) [Land route] Defeat all enemies / [Setsuko route] Defeat all Cherubim Soldiers & Mythology Beasts.'''Victory Condition (includes hidden):''' (1) Defeat Ishkick Commander (Henry); (2) After the Phantom Pain arrives, defeat Windam (Neo), or 3 turns pass; (3) After the Alien Invader forces arrive, defeat the Bandock or the Elder Battleship, or 3 turns pass; (4) [Land route] Defeat all enemies / [Setsuko route] Defeat all Cherubim Soldiers & Mythology Beasts. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship or protagonist's unit is defeated; (3) Ally battleship, or protagonist's unit, or Aquarion is defeated; (4) Ally battleship, or protagonist's unit, or Aquarion, or Shurouga [Land route] / Virgola Unit 2 [Setsuko route] is defeated. '''SR Point:''' Clear the map within 9 turns. '''Secret Requirements:'''
*ZEUTH Points
**To obtain an additional ZEUTH Point, take the Pacific Route.
*Gaia Gundam (Stella) Points +1
**Have Shinn's Impulse Gundam battle Stella's Gaia Gundam.
*Gaia Gundam (Stella) Points +1
**Defeat the Extended trio: Chaos Gundam (Sting), Abyss Gundam (Aule), and Gaia Gundam (Stella).
*Mega Bazooka Launcher attack for Hyaku Shiki [Early] (1/4) + (2/4)
**Have Quattro's Hyaku Shiki defeat at least 3 enemies during this stage.
**Take the Pacific route.
*Aki Points +1 (Land route starts here)
**Have Kappei's Zambot 3 battle Butcher's Bandock.
*Aki Points +1
**Defeat the Bandock (Butcher).
*Aki Points
**To obtain an additional Aki Point, take the Gallia Route.
*TFO [Early] (3/3)
**Purchase the Inertia Control Engineering Manual ({{Ruby|慣性制御工学|かんせいせいぎょこうがく}}マニュアル) from the Bazaar. The two items will form the TFO. If the conditions are not met, the TFO will be obtained during stage 24.
*Rushrod (Yassaba) (1/4)
**Take the Gallia Route.
*Haro (1/6)
**Take the Gallia Route.
*Spirit of Steel (3/6)
**Take the Gallia Route.
'''Unit Acquisition:'''
*Orguss/Orguss Flyer (Kei)
**Inherits upgrades from Bronco II
*M.Lover Maaie (Maaie)
*M.Lover Lieea (Lieea)
*Mome joins as a sub-pilot of the Groma.
*Groma (Shaiya, Mimsy, Mome)
*Terminus 909 (Holland)
*Terminus 606 (Matthieu, Stoner)
*Nirvash (Eureka, Renton)
*Gekkougou (Talho, Happ, Kengou)
*Solar Aquarion (Apollo, Pierre, Sylvia)
*Solar Aquarion (Apollo) (pilot sets B & D) gains the "Fire Fist" attack.
*Aquarion Mars (Pierre) (pilot sets B & D) gains the "Flaming Kick" attack.
*Mel rejoins as a sub-pilot of the Gunleon (Playing as Land only)
*Virgola Unit 2 (Toby) (Playing as Setsuko only)
*Shurouga (Asakim) (Playing as Land only)
*Some support units are not available for this stage.
**Zeta Gundam: Rick Dias (Apolly), Rick Dias (Roberto), Methuss (Reccoa), Nemo x2
**∀ Gundam: Borjarnon (Gavane), Borjarnon (Joseph)
**Xabungle: Trad 11 [2nd]
**King Overman Gainer: Panther (Gauli), Panther (Bello)
'''Unit Acquisition (post-stage):'''
*TFO (No pilot)
'''Route-Exclusive Bazaar Units:'''
*To purchase the Dugger and the Caprico (first opportunity) from the Bazaar, take the Gallia route.
|}

==Stages 16 - 20==
{| width="70%"
|- class="fc-route-h"
|'''太平洋部隊を希望する Volunteer for the Pacific Division''' Gravion Gundam X God Sigma Gundam SEED Destiny Zeta Gundam
|'''ガリア部隊を希望する Volunteer for the Galia Division''' Xabungle Orguss King Gainer Zambot 3 Grendizer Turn A Gundam

|-
| class="fc-route1" |'''{{Ruby|第１６話|だい１６わ}}：{{Ruby|交差|こうさ}}する{{Ruby|決意|けつい}} Scenario 16 - Crossing Resolves'''
| class="fc-route2" |'''{{Ruby|第１６話|だい１６わ}}：{{Ruby|特異点|とくいてん}} Scenario 16 - Singularity Point'''

|-
|'''Victory Condition:''' (1) Reduce the Gekkougou to 10% HP; (2) Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Reduce the Gekkougou or Nirvash to 10% HP, or 3rd turn is reached; (2) Defeat all enemies. '''Defeat Condition:''' (1) Ally battleship, or any enemy unit is defeated; (2) Ally battleship is defeated. '''SR Point:''' After enemy reinforcements arrive, defeat all enemies within 4 turns. '''Secret Requirements:'''
*Mega Bazooka Launcher attack for Hyaku Shiki [Early] (3/4)
**'''Before the stage''', purchase the High-Capacity Energy Pack ({{Ruby|大容量|だいようりょう}}エネルギーパック) from the Bazaar.
*ZEUTH Points +1 (Land - Pacific route starts here)
**Defeat Freedom Gundam (Kira) (ally NPC, so only MAP attacks work)
'''Unit Acquisition:'''
*After the route split choice, custom squad formations become available. (Setsuko route)
*Nirvash (Eureka, Renton)
*Terminus 909 (Holland)
*Terminus 808 (Hilda)
*Terminus 606 (Matthieu, Stoner)
*Gekkougou (Talho, Happ, Kengou)
*Freedom Gundam (Kira) (ally NPC)
*Freeden is unavailable for this stage.
*The Eureka Seven units are temporarily forced to join the enemy team.
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Ishkick Commander (Robert).'''Victory Condition (includes hidden):''' (1) Defeat all enemies or 4th turn is reached; (2) Defeat Ishkick Commander (Robert). '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat all enemies within 3 turns. '''Secret Requirements:'''
*Haro (2/6)
**Purchase the First Issue of Ray-Out (ray=out{{Ruby|創刊号|そうかんごう}}) from the Bazaar
'''Unit Acquisition:'''
*After the route split choice, custom squad formations become available. (Setsuko route)
'''Unit Acquisition (post-stage):'''
*[Bazaar unit] Dugger
*[Bazaar unit - Gallia route] Caprico

|-
| class="fc-route1" |'''{{Ruby|第１７話|だい１７わ}}：{{Ruby|青い|あおい}}{{Ruby|放浪者|ほうろうしゃ}} Scenario 17 - Blue Drifter'''
| class="fc-route2" |'''{{Ruby|第１７話|だい１７わ}}：{{Ruby|地獄|じごく}}の{{Ruby|エキデン|駅伝}} Scenario 17 - The Relay from Hell'''

|-
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship, Grendizer, or Marine Spazer is defeated. '''SR Point:''' Clear the map by turn 6 player phase. '''Unit Acquisition:'''
*Baldios (Marin, Oliver, Raita)
*Grendizer/Spazer (Duke)
*Marine Spazer (Hikaru)
*Freeden cannot move
*Zeta Gundam and Gundam SEED Destiny units are unavailable for this stage
'''Unit Acquisition (post-stage):'''
*Nirvash (Eureka, Renton)
*Terminus 909 (Holland)
*Terminus 808 (Hilda)
*Terminus 606 (Matthieu, Stoner)
*Gekkougou (Talho, Happ, Kengou)
|'''Victory Condition:''' Defeat Golem. '''Defeat Condition:''' (1) Gatchiko is defeated; (2) Ally battleship is defeated. '''SR Point:''' After Big O arrives, defeat Golem within 4 turns. '''Relay Race Winner:'''
*In this scenario, whichever team gets the most kills will be the winner of the relay race, and gain 50 additional PP. If the result is a tie, no team will receive any additional PP.
**'''Sara Team:''' Sara, Gainer, Bello, Loran, Sochie, Miashei, Gavanne, Kouji, Maria, Kappei, Rag, Mimsy
**'''Adette Team:''' Adette, Gain, Gauli, Kei, Maaie, Lieea, Jiron, Blume, Dike, Uchuuta, Keiko, Ichitarou
**The protagonist can choose '''「サラチームに参加」''' to join Sara Team, or '''「アデットチームに参加」''' to join Adette Team. Joseph will then join the other team.
**Kills by units with sub-pilots who belong to either team still count towards the team effort. For example, Zambot 3 has Kappei in Sara Team, while Uchuuta and Keiko are in Adette Team, so each enemy defeated by Zambot 3 will simultaneously add 1 point to Sara Team and 2 points to Adette Team.
'''Secret Requirements:'''
*Rushrod (Yassaba) requirement:
**Gainer, Gain, Sara, Gauli, Bello, and Adette must have a combined kill count of 100 or more by the end of Scenario 18.
'''Unit Acquisition:'''
*Big O (Roger)
*Dorbeck (Adette)

|-
| class="fc-route1" |'''{{Ruby|第１８話|だい１８わ}}：{{Ruby|血|ち}}に{{Ruby|染まる|そまる}}{{Ruby|瞳|ひとみ}} Scenario 18 - Bloodstained Eyes'''
| class="fc-route2" |'''{{Ruby|第１８話|だい１８わ}}：さらば、{{Ruby|我が|わが}}{{Ruby|友|とも}}よ Scenario 18 - Farewell, My Friend'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Zamza-Zah; (3) Defeat the Battle Airship or the Elder Battleship.'''Victory Condition (includes hidden):''' (1) Battle Asshimar or the Garuda-class, or 3rd turn is reached; (2) Defeat Zamza-Zah; (3) Defeat the Battle Airship or the Elder Battleship. '''Defeat Condition:''' (1) Ally battleship or Impulse Gundam is defeated; (2) Ally battleship, Impulse Gundam, or Amuro's unit is defeated; (3) Ally battleship is defeated. '''SR Point:''' Clear the map within 7 turns. '''Secret Requirements:'''
*Gundam Mk-II [Black]
**If the condition is met, Amuro will join with a black Gundam Mk-II. If not, Amuro will join with a red Rick Dias [2nd unit].
*Dijeh requirement:
**Kamille, Quattro, Bright, Emma, Reccoa, Apolly, Roberto, Amuro, and Katz must have an '''average''' level of 25 or more by the end of Scenario 25.
**Amuro and Katz must have an '''average''' kill count of 25 or more by the end of Scenario 25.
'''Unit Acquisition:'''
*Rick Dias [Red, 2nd] or Gundam Mk-II [Black] (Amuro)
*Shinn's ????? is unlocked, and is revealed to be the "SEED" ability
*Shinn's Impulse Gundam is forced to Tactical Reload into Sword Impulse Gundam form after an event.
*Freeden is unavailable for this stage
'''Unit Acquisition (post-stage):'''
*(Katz)
*Nirvash (Eureka, Renton)
*Terminus 909 (Holland)
*Terminus 808 (Hilda)
*Terminus 606 (Matthieu, Stoner)
*Gekkougou (Talho, Happ, Kengou)
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) Zambo Ace is defeated; (2) Ally battleship or Zambo Ace is defeated; (3) Ally battleship or Zambo Ace is defeated, or enemy reaches the marked line; (4) Ally battleship or Aquarion is defeated, or enemy reaches the marked line. '''SR Point:''' Clear the map within 7 turns. '''Secret Requirements:'''
*Aki Points +1
**Have Zambo Ace/Zambird (Kappei) defeat at least two enemies before reinforcements arrive.
***(This is extremely luck-based with an unupgraded Zambo Ace - at least upgrading Zambot 3's weapons and armor beforehand will make this a lot easier.)
*Rushrod (Yassaba) (2/4) + (3/4)
**By the end of the map, Gainer, Gain, Gauli, Sara, Bello, and Adette must have a combined kill count of at least 100.
**Purchase the Scrap (OM) (スクラップ(OM)) from the Bazaar.
'''Unit Acquisition:'''
*Aquarion Luna (Tsugumi, Jun, Apollo)
*Aquarion Luna (Tsugumi) (pilot set E) gains the "Gyaku Nensha Bakuha" attack.
*Aquarion Mars (Jun) (pilot set E) gains the "Nensha Ichigan" attack.
*Zambo Ace/Zambird (Kappei) (later becomes Zambot 3 (Kappei, Uchuuta, Keiko) again)

|-
| class="fc-route1" |'''{{Ruby|第１９話|だい１９わ}}：{{Ruby|よみがえる|蘇る}}{{Ruby|翼|つばさ}} Scenario 19 - Resurrected Wings'''
| class="fc-route2" |'''{{Ruby|第１９話|だい１９わ}}：{{Ruby|建国|けんこく}}のブリザード Scenario 19 - Nation-Founding Blizzard'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat all enemies, or the Archangel reaches the marked line. '''Defeat Condition:''' (1) Freedom Gundam is defeated; (2) Any ally unit is defeated; (3) Ally battleship, or Freedom Gundam, or Murasame (Waltfeld) is defeated. '''SR Point:''' Defeat all enemies within 3 turns. '''Secret Requirements:'''
*Mega Bazooka Launcher attack for Hyaku Shiki [Early] (4/4)
**Purchase the Mega Condenser (メガコンデンサー) from the Bazaar. The two items will combine to form the Mega Bazooka Launcher for Hyaku Shiki. If the conditions are not met, the attack will be obtained after stage 33 (Setsuko - Gibraltar Base route).
'''Unit Acquisition:'''
*Freedom Gundam (Kira)
*Murasame (Waltfeld)
*Archangel (Murrue, Neumann, Chandra)
*Only the protagonist's unit, Virgola Unit 2 (Toby) (playing as Setsuko only), Gundam X (except the Freeden) and Eureka Seven units are available for this stage.
*Battleships cannot be boarded, nor use the Recall ability for this stage.
'''Unit Acquisition (post-stage):'''
*Alex changes name to Athrun.
*Saviour Gundam (Athrun)
*Hyaku Shiki gains the "Mega Bazooka Launcher" attack.

|'''Victory Condition:''' (1) Defeat Wodom (Poe) and SUMO Gold Type; (2) Defeat Jinba and Beck Victory Deluxe.'''Victory Condition (includes hidden):''' (1) Defeat Wodom (Poe) and SUMO Gold Type; alternatively but does not achieve the SR point, 5th turn reached; (2) Defeat Jinba and Beck Victory Deluxe. '''Defeat Condition:''' (1) Any ally unit or the Soleil is defeated; (2) Ally battleship, Big O, ∀ Gundam, or the Soleil is defeated; (3) Ally battleship, Big O, or ∀ Gundam is defeated. '''SR Point:''' Achieve the first victory condition within 4 turns. '''Secret Requirements:'''
*Gundam Mk-II [Black]
**If the condition is met, Amuro will join with a black Gundam Mk-II after the stage. If not, Amuro will join with a red Rick Dias [2nd unit].
*Spirit of Steel (4/6)
**Purchase the Makeup Kit ({{Ruby|化粧道具|けしょうどうぐ}}) from the Bazaar.
'''Unit Acquisition (post-stage):'''
*Gundam Mk-II [Black] (instead of Rick Dias [Red, 2nd])
*Big O (Roger)

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第２０話|だい２０わ}}：{{Ruby|ウソ|嘘}}のない{{Ruby|世界|せかい}} Scenario 20 - A World Without Lies'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Planetta or Mexbrute; (2) Defeat Planetta and the Emperor Kai.'''Victory Condition (includes hidden):''' (1) Defeat Mexbrute, or 4th turn reached; (2) Defeat Planetta and the Emperor Kai. '''Defeat Condition:''' (1) Any ally is defeated; (2) Ally battleship is defeated. '''SR Point:''' Defeat Mexbrute within 3 turns. '''Secret Requirements:'''
*Haro (3/6)
**Purchase the Signed CD (サイン{{Ruby|入り|いり}}ディスク) from the Bazaar.
*Dijeh requirement:
**Kamille, Quattro, Bright, Emma, Reccoa, Apolly, Roberto, Amuro, and Katz must have an '''average''' level of 25 or more by the end of Scenario 25.
**Amuro and Katz must have an '''average''' kill count of 25 or more by the end of Scenario 25.
'''Unit Acquisition:'''
*Nirvash (Renton and Eureka switch pilot spots for this stage)
*Renton gains the "Potential" and "Break Morale Limit" pilot skills, and the squad leader effect "All members of the platoon receive the effect of 'Morale+ (Evade)'".
*Eureka loses her squad leader effect for this stage.
'''Unit Acquisition (post-stage):'''
*Gatchiko (Gain)
*[Bazaar unit - Pacific route] Caprico
*[Bazaar unit] Promeus
|} 

==Stages 21 - 25==
{| width="70%"
|- class="fc-route-h"
| width="50%" |'''Setsuko Route'''
| width="50%" |'''Land Route'''

|-
| class="fc-route3" |'''{{Ruby|第２１話|だい２１わ}}：{{Ruby|残される|のこされる}}もの Scenario 21 - That Which Remains'''
| class="fc-route4" |'''{{Ruby|第２１話|だい２１わ}}：{{Ruby|父|ちち}}の{{Ruby|思い出|おもいで}} Scenario 21 - Memories of Father'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Shurouga; (3) Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Defeat all enemies, or 4th turn reached; (2) Defeat Shurouga, or 6th turn reached; (3) Defeat all enemies. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship, any Virgola unit is defeated. '''SR Point:''' Defeat Shurouga within 5 turns. '''Unit Acquisition:'''
*Chaos Leo (Lowen)
*Virgola Unit 1 (Setsuko)
*Virgola Unit 2 (Toby)
**All upgrades on Virgola Unit 2 are refunded.
**All PP obtained by Toby is transferred to Setsuko.
'''Unit Acquisition (post-stage):'''
*Setsuko moves to the Virgola Kai.
*Virgola Kai (Setsuko)
**Inherits upgrades from Virgola Unit 1.

|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) Gunleon is defeated; (2) Ally battleship, Gunleon or Shurouga is defeated. '''SR Point:''' Defeat all enemies within 3 turns. '''Unit Acquisition:'''
*Chaos Leo (Lowen)
*Shurouga (Asakim)

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第２２話|だい２２わ}}：{{Ruby|自分|じぶん}}だけのエクソダス Scenario 22 - My Own Exodus'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Dominator; (3) Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Battle Planetta, or defeat the Emperor Kai, or 3rd turn reached; (2) Defeat Dominator or 6th turn reached; (3) Defeat all enemies. '''Defeat Condition:''' (1) Ally battleship, or King Gainer, or Panther (Gauli) is defeated; (2) Ally battleship or King Gainer is defeated. '''SR Point:''' Defeat all other enemies, and then defeat Dominator within 5 turns. '''Secret Requirements:'''
*Rushrod (Yassaba) (4/4)
**Purchase the Overcoat (オーバーコート) from the Bazaar. The two items will combine to form the Rushrod.
**If you are playing as Land, Yassaba will join after stage 47.
**If you are playing as Setsuko, Yassaba will not join you.
'''Unit Acquisition (pre-deployment intermission):'''
*Gundam X gains the Satellite Cannon exchangeable parts
**Gundam X form [using Satellite Cannon parts]
'''Unit Acquisition:'''
*King Gainer gains the "Overfreeze Bullet" attack, an improved "Overskill" ability, +200 HP, +20 EN, +5 Hit Rate, +200 base damage for all existing attacks.
**Overskill : Activates when Oversense Level is at least 4 and 130+ Morale: +10+x Mobility, +10+x Hit Rate (x = Oversense Level), +1 Movement, Shadow(30% chance of full evasion)
*Gain moves to the Emperanza.
*Emperanza (Gain)
**Inherits upgrades from Gatchiko.
*Getter Dragon/Getter Liger/Getter Poseidon (Ryoma, Hayato, Benkei) aka Getter Robo G
'''Unit Acquisition (post-stage):'''
*[Bazaar unit] Dorbeck [green]
*Rushrod (No pilot)

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第２３話|だい２３わ}}：{{Ruby|百鬼|ひゃっき}}の{{Ruby|挑戦状|ちょうせんじょう}} Scenario 23 - Challenge from the Hyakki'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Mecha Dokuganki (Dokuganki) and Big Duo. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship is defeated. '''SR Point:''' Clear the map within 7 turns. '''Secret Requirements:'''
*Hero's Mark (3/5)
**Purchase the Natto ({{Ruby|納豆|なっと}}) from the Bazaar.
'''Unit Acquisition:'''
*Aquarion Luna/Solar Aquarion/Aquarion Mars (Reika, Apollo, Sirius) aka Aquarion
*Aquarion Luna temporarily cannot transform
*Lady Command (Michiru)
*Big O (Roger)
*Aquarion Luna (Reika) (pilot sets C & D) gains the "Shouryuu Tenrai" attack.
'''Unit Acquisition (post-stage):'''
*Sylvia, Pierre, Jun, and Tsugumi join as possible pilots for Aquarion (sets A, B, C, D, and E)

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第２４話|だい２４わ}}：{{Ruby|光子力|こうしりょく}}{{Ruby|研究所|けんきゅうしょ}}{{Ruby|奪還|だっかん}}{{Ruby|作戦|さくせん}} Scenario 24 - The Photon Power Laboratory Recapture Operation'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Mecha Tekkouki.'''Victory Condition (includes hidden):''' (1) Defeat Mecha Dokuganki (Dokuganki) or 4th turn reached; (2) Defeat Mecha Tekkouki. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat all other enemies, then defeat Mecha Dokuganki (Dokuganki) within 3 turns. '''Secret Requirements:'''
*Mecha Tekkouki (Tekkouki) (1/2)
**Sortie Ryoma/Hayato/Benkei's Getter Robo G. Have Ryoma's Getter Dragon battle Tekkouki's Mecha Tekkouki.
*Great Booster attack for Great Mazinger [Early] (1/2)
**Have Boss Borot (Boss) move to the southwestern edge of the Photon Power Laboratory (where Great Mazinger crashed into the barrier). Boss will find a fragment of the Great Booster there.
'''Unit Acquisition (pre-stage intermission):'''
*Kouji moves to the TFO
*TFO (Kouji)
**Obtained if the secret wasn't met earlier after stage 15.
'''Unit Acquisition:'''
*Kouji moves to the Mazinger Z
*Mazinger Z (Kouji)
*Great Mazinger (Tetsuya)
*Boss Borot (Boss, Nuke, Mucha)
*Diana A (Sayaka)
*Venus A (Jun)
*TFO becomes unavailable for this stage after the battle begins.
|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第２５話|だい２５わ}}：{{Ruby|闇|やみ}}の{{Ruby|住処|すみか}} Scenario 25 - Darkness' Lair'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; [If Getter Dragon battled Mecha Tekkouki in the previous stage, and Getter Robo G has been sortied and has survived] (2) Defeat Mecha Tekkouki.'''Victory Condition (includes hidden):''' (1) Defeat all enemies; [If Getter Dragon battled Mecha Tekkouki in the previous stage, and Getter Robo G has been sortied and has survived] (2) After the duel begins, defeat Mecha Tekkouki, or Getter Robo G is defeated, or 3 turns pass. '''Defeat Condition:''' (1) Ally battleship or Aquarion is defeated; (2) Ally battleship, Aquarion, or Mecha Tekkouki is defeated; (3) Ally battleship is defeated. '''SR Point:''' Achieve the first victory condition within 6 turns. '''Secret Requirements:'''
*Mecha Tekkouki (Tekkouki) (2/2)
**Sortie Ryoma/Hayato/Benkei's Getter Robo G and have it survive until you defeat all enemies. Getter Robo G (Ryoma, Hayato, Benkei) and Mecha Tekkouki (Tekkouki) will duel. Defeat Mecha Tekkouki (Tekkouki) within 3 turns. If the conditions are met, Tekkouki and his Mecha Tekkouki will join after the stage.
*Dijeh (1/2) + (2/2)
**By the end of this map, Kamille, Quattro, Amuro, Bright, Emma, Reccoa, Apolly, Roberto, and Katz must have an average level of at least 25.
**By the end of this map, Amuro and Katz must have an average kill count of at least 25. If you met the requirements, you will receive the Dijeh during the pre-deployment intermission next stage.
'''Unit Acquisition:'''
*Mecha Tekkouki (Tekkouki) (may become an enemy in the Getter Robo G - Mecha Tekkouki duel)
*Solar Aquarion (Apollo) (pilot sets A & C) gains the "Mugen Cross" attack.
*Aquarion Mars (Sirius) (pilot sets A & C) gains the "Zelotupia Gladius" attack.
*Only Aquarion pilot set A is available for this stage.
*Aquarion is forced to transform into Solar Aquarion after an event. Solar Aquarion is then temporarily unable to attack or transform.
*If the Getter Robo G vs Mecha Tekkouki duel takes place, all ZEUTH units other than Getter Robo G become unable to act for the rest of the stage.
**(Due to a glitch, when selecting a spirit command, Getter Robo G pilots can have allies cast some spirit commands (e.g. Trust, Cheer, Bless etc.) via the "-OTHERS COMMAND" side menu.)
*After the pre-deployment intermission, Eureka can no longer be trained using PP. (playing as Setsuko only)
'''Unit Acquisition (post-stage):'''
*Big O (Roger)
*Mecha Tekkouki (Tekkouki) (leaves due to route split immediately on Setsuko route)

|} 

==Stages 26 - 40==
{| width="100%"
|- class="fc-route-h"
| colspan="2" width="50%" |'''Setsuko Route''' Gravion Gundam SEED Destiny Zeta Gundam God Sigma Zambot Mazinger/Great Mazinger/Grendizer Turn A Gundam
| colspan="2" width="50%" |'''Land Route''' Eureka Seven Baldios Aquarion Xabungle Orguss Getter Robo G Gundam X King Gainer

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第２６話|だい２６わ}}：ホンコン・シティ Scenario 26 - Hong Kong City'''
| colspan="2" class="fc-route4" |'''{{Ruby|第２６話|だい２６わ}}：イントゥ・ザ・ネイチャー Scenario 26 - Into the Nature'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Psycho Gundam.'''Victory Condition (includes hidden):''' (1) Reduce either Asshimar (Buran), Windam (Neo), or the Garuda-class below 50% HP, or 5th turn reached; (2) Defeat Psycho Gundam. '''Defeat Condition:''' (1) Ally battleship is defeated; (2) Gran Kaiser/God Gravion is defeated. '''SR Point:''' Defeat Psycho Gundam within 6 turns. '''Secret Requirements:'''
*Gaia Gundam (Stella) Points +1
**Have Shinn's Impulse Gundam battle Stella's Gaia Gundam.
*Gaplant (Four) Points +1
**Have Kamille's Gundam Mk-II battle Four's Psycho Gundam.
*Gaplant (Four) Points +1
**Have Kamille's Gundam Mk-II defeat Four's Psycho Gundam.
*Dijeh
**If the conditions are met, you will obtain the Dijeh during the pre-deployment intermission.
'''Unit Acquisition (pre-deployment intermission):'''
*Dijeh (No pilot)

| colspan="2" |'''Victory Condition:''' (1) Have Nirvash reach the marked point; (2) Have Nirvash reach the marked point, or defeat Nirvash theEND.'''Victory Condition (includes hidden):''' (1) Have Nirvash move 9 spaces or more north from starting position, or 3rd turn enemy phase reached; (2) Have Nirvash reach the marked point, or defeat Nirvash theEND. '''Defeat Condition:''' Ally battleship or Nirvash is defeated. '''SR Point:''' Defeat all other enemies, then defeat Nirvash theEND within 6 turns. '''Secret Requirements:'''
*Shadow Angel Feather (1/5) + (2/5)
**Sortie Kei's Orguss (optional but makes this secret requirement easier). Have Kei's Orguss and Shaiya's Groma defeat at least 8 enemies total during this stage.
**Buy the Hong Kong Souvenir Video (ホンコン{{Ruby|土産|みやげ}}のビデオ) from the Bazaar.
'''Unit Acquisition (post-stage):'''
*[Bazaar unit] Government
*[Bazaar unit - Land route] Galapagos

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第２７話|だい２７わ}}：{{Ruby|生じる|しょうじる}}{{Ruby|亀裂|きれつ}} Scenario 27 - Rising Fissure'''
| colspan="2" class="fc-route4" |'''{{Ruby|第２７話|だい２７わ}}：{{Ruby|１５年目|１５ねんめ}}の{{Ruby|亡霊|ぼうれい}} Scenario 27 - The Ghost From 15 Years Ago'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) Ally battleship, ∀ Gundam or SUMO Gold Type is defeated; (2) Ally battleship, ∀ Gundam, SUMO Gold Type, or Impulse Gundam is defeated. '''SR Point:''' Defeat all enemies within 4 turns. '''Unit Acquisition (pre-stage):'''
*∀ Gundam gains +200 HP, +20 EN, +5 Mobility, +1 movement, flight, unit rank A for Sky terrain, 1 rank increase in Sky terrain for all attacks except for "Beam Rifle" and "Beam Rifle (Rapid Fire)", +200 base damage for all existing attacks, +1 maximum range/+25 Hit/+10% CT for "Beam Saber" attack, and the "Beam Drive Unit" attack.
 '''Unit Acquisition:'''
*SUMO Gold Type (Harry)
*Gran Kaiser can no longer form God Gravion.

| colspan="2" |'''Victory Condition:''' [1st half] Defeat Rasveht; [2nd half] (1) Move Terminus 909 into the marked area within 5 turns; (2) Defeat the Patulia.'''Victory Condition (includes hidden):''' [1st half] (1) Defeat Rasveht or 4th turn reached; [2nd half] (1) Move Terminus 909 into the marked area within 5 turns; (2) Defeat the Patulia. '''Defeat Condition:''' [1st half] Any ally unit is defeated; [2nd half] (1) Ally battleship or Terminus 909 is defeated, or 6th turn reached; (2) Ally battleship or Gundam X is defeated; (3) Ally battleship or Gundam Double X is defeated. '''SR Point:''' In the second half of the stage, defeat all enemies, then have Terminus 909 reach the marked area within 4 turns. '''Secret Requirements:'''
*Tiffa & G-Bits Points +1
**In the second half of the stage, have either Garrod's Gundam Double X or Jamil's Gundam X defeat the Patulia.
*G-Bits attack for Gundam X and Gundam Double X [Land route Exclusive Method] (1/3) + (2/3)
**You must have obtained at least 4 Tiffa & G-Bits Points by the end of this stage.
**Purchase the Black Box F (ブラックボックスＦ) from the Bazaar.
'''Unit Acquisition (second half):'''
*Garrod moves to the Gundam Double X.
*Gundam Double X (Garrod)
**Inherits upgrades from Gundam X.
*Jamil can now pilot Gundam X series mobile suits. Jamil moves to the Gundam X.
**Jamil's squad leader effect is changed to "Hit Rate +10% & Evade Rate +10%"
*Sarah takes over as Captain of the Freeden.
**Sarah gains Potential & Support Attack & Repair Skill & Commander pilot skills, and the "Adjacent allies' EN costs -10%" battleship captain effect.
**Sarah inherits all PP gained by Jamil.
*Renton becomes the main pilot of the Nirvash for the second half of the stage.
*Renton gains the "Potential" and "Break Morale Limit" pilot skills, and the squad leader effect "All members of the platoon receive the effect of 'Morale+ (Evade)'".
*Eureka becomes unavailable for the second half of the stage.
'''Unit Acquisition (post-stage):'''
*Jamil can now learn the "Blocking" and "Backup Attack" pilot skills.
*Sarah can now be trained using PP.
*Jamil can no longer captain the Freeden.

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第２８話|だい２８わ}}：{{Ruby|しろがね|白銀}}の{{Ruby|牙|きば}} Scenario 28 - Silver Fang'''
| colspan="2" class="fc-route4" |'''{{Ruby|第２８話|だい２８わ}}：{{Ruby|魂|たましい}}のコスプレイヤー Scenario 28 - Spirit Cosplayer'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat the Elder Battleship or all Krahgens; (3) Defeat Hyuduel.'''Victory Condition (includes hidden):''' (1) Battle a Krahgen, or move a unit into the southern area with Krahgens, or defeat 8 enemy squads, or 3rd turn enemy phase reached; (2) Defeat the Elder Battleship; alternatively, all Krahgens leave the map (by defeat or retreat); (3) Defeat Hyuduel. '''Defeat Condition:''' (1) Ally battleship or God Sigma is defeated; (2) Ally battleship, God Sigma, or Gran Kaiser/God Gravion is defeated. '''SR Point:''' Defeat at least 4 Krahgens, or defeat the Elder Battleship before all Krahgens leave the map. '''Secret Requirements:'''
*Aki Points +1
**Defeat all Mecha-Boost units (includes Krahgen (クラーゲン), Domira (ドミラ), and Kumoganira (クモガニラ)) before the Zeravire arrive.
***(Have ZEUTH prioritize impeding the Krahgens' movements. Avoid defeating all Krahgens until all other Mecha-Boost units are defeated.) (The Krahgens will attempt to retreat by reaching the east edge of the map. If all Krahgens are defeated or have retreated, or the Elder Battleship is defeated, all other Mecha-Boost units will also retreat.)
'''Unit Acquisition:'''
*Gran Kaiser (Touga) permanently becomes God Gravion (Touga, Eiji, Runa, Mizuki, Eina, Leele).
*God Gravion gains the "Choujuuken" attack.
*Gran Kaiser loses the "Gran Knights Attack" attack.

| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' [1st half] Any ally unit is defeated; [2nd half] (1) Ally battleship, Aquarion or Getter Robo G is defeated; (2) Ally battleship or Getter Robo G is defeated. '''SR Point:''' Clear the second half of the stage within 6 turns. '''Secret Requirements:'''
*Hero's Mark (4/5)
**Purchase the Smoked Giant Lizard ({{Ruby|大|だい}}トカゲのくんせい) from the Bazaar.
'''Unit Acquisition (second half):'''
*Getter Dragon gains +10 EN, +100 Armor, and the "Shine Spark" attack.
**Getter Liger gains +10 EN, +100 Armor.
**Getter Poseidon gains +10 EN.
*Solar Aquarion (pilot set A) gains the "Koujigen Mugen Attack" attack.
*Only Aquarion pilot set A is available for this stage.
*Getter Robo G is forced to transform into Getter Dragon at the start of the 2nd half of this stage. Getter Dragon is then temporarily unable to transform.

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第２９話|だい２９わ}}：{{Ruby|灼熱|しゃくねつ}}の{{Ruby|海原|うなばら}} Scenario 29 - The Boiling Sea'''
| colspan="2" class="fc-route4" |'''{{Ruby|第２９話|だい２９わ}}：アウトサイダー Scenario 29 - Outsider'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Asshimar (Bran), Gaplant (Rosamia), and Windam (Neo); (2) Defeat Mahiroo (Sweatson). '''Defeat Condition:''' Ally battleship, Gundam Mk-II or Virgola Kai is defeated. '''SR Point:''' Achieve the first victory condition within 5 turns. '''Secret Requirements:'''
*Gaia Gundam (Stella) Points +1
**Sortie Shinn's Impulse Gundam. Have Shinn's Impulse Gundam defeat Stella's Gaia Gundam.
*Gaplant (Four) Points +1
**Have Kamille's Gundam Mk-II defeat Four's Psycho Gundam.
*ZEUTH Points +1
**Defeat Freedom Gundam (Kira).
*ZEUTH Points +1
**Defeat the Archangel (Murrue).
'''Unit Acquisition:'''
*Minerva temporarily loses the "Tannhauser" and "Tannhauser (MAP)" attacks for this stage after an event.
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat GOUF Ignited and Nikick (Olson). '''Defeat Condition:''' (1) Ally battleship or Eliphas is defeated; (2) Ally battleship, Eliphas, or Orguss is defeated. '''SR Point:''' Achieve the first victory condition within 3 turns. '''Secret Requirements:'''
*ZEUTH Points +2 (Land - Gallia route starts here)
**Do not defeat any ZAFT soldiers.
*ZEUTH Points +1
**Have at least 3 platoons of ZAFT soldiers survive when you defeat Yzak's GOUF Ignited (cannot get this secret if you already obtained the ZEUTH Points +2 secret above).
*Shadow Angel Feather (3/5)
**Purchase the Emaan Souvenir Pennant (エマーン{{Ruby|土産|みやげ}}のペナント) from the Bazaar.
'''Unit Acquisition:'''
*Eliphas (Ziene)
*Orguss gains +200 HP, +5 Mobility, +5 Hit Rate, +50 Armor, +200 base damage for all attacks (except Full Volley), +300 base damage for Full Volley.
**Orguss Flyer gains +200 HP, +5 Mobility, +5 Hit Rate, +50 Armor, +200 base damage for all attacks, unit rank B for Ground and Sea terrains.

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第３０話|だい３０わ}}：{{Ruby|罪|つみ}}の{{Ruby|在処|ありか}} Scenario 30 - The Place of Sin'''
| colspan="2" class="fc-route4" |'''{{Ruby|第３０話|だい３０わ}}：アクペリエンス Scenario 30 - Acperience'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat the Garuda-class.'''Victory Condition (includes hidden):''' (1) Defeat Psycho Gundam, Windam (Neo), Chaos Gundam, Abyss Gundam, and Gaia Gundam; (2) Defeat the Garuda-class. '''Defeat Condition:''' Ally battleship, Saviour Gundam, or Impulse Gundam is defeated, or any enemy unit reaches the marked line. '''SR Point:''' Defeat Psycho Gundam within 5 turns. '''Secret Requirements:'''
*Gaplant (Four) Points +1
**Sortie Kamille in any unit. Have Kamille's unit defeat Four's Psycho Gundam.
*Gaia Gundam (Stella) Points +1
**Defeat Four's Psycho Gundam while Stella's Gaia Gundam is still on the map.
*Gaia Gundam (Stella) Points +1
**Have Shinn's Impulse Gundam defeat Stella's Gaia Gundam.
*ZEUTH Points +1
**Defeat Freedom Gundam (Kira).
*ZEUTH Points +1
**Defeat the Archangel (Murrue).
'''Unit Acquisition:'''
*The only battleship available for this stage is the King Beal (Heizaemon).
*Only the Force form of Impulse Gundam is available for this stage.
**Force Impulse Gundam cannot use Tactical Reload for this stage.
*Savior Gundam (Athrun) becomes unavailable for the rest of this stage after an event.

| colspan="2" |'''Victory Condition:''' Defeat all enemies.'''Victory Condition (includes hidden):''' Defeat all enemies, or 7th turn reached. '''Defeat Condition:''' (1) Ally battleship is defeated; (2) Ally battleship, Freedom Gundam, Murasame, or Esperanza is defeated. '''SR Point:''' Defeat all enemies within 6 turns. '''Secret Requirements:'''
*ZEUTH Points +1
**Do not have the Archangel (Murrue), Freedom Gundam (Kira), Murasame (Waltfeld), or Esperanza (Enil) defeat any enemies.
'''Unit Acquisition:'''
*Freedom Gundam (Kira)
*Murasame (Waltfeld)
*Esperanza (Enil)
*Archangel (Murrue, Neumann, Chandra)
*Nirvash (Eureka) becomes unavailable for this stage after battle begins.
*(Eureka)
**Eureka can no longer be trained using PP, but Eureka's skills and stats trained using PP are retained. Eureka loses her squad leader effect.
'''Unit Acquisition (post-stage):'''
*Renton becomes the main pilot of the Nirvash.
*Renton gains the "Potential" and "Break Morale Limit" pilot skills, and the squad leader effect "All members of the platoon receive the effect of 'Morale+ (Evade)'".

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第３１話|だい３１わ}}：{{Ruby|絆|きずな}}が{{Ruby|生む|うむ}}もの Scenario 31 - Born From Our Bonds'''
| colspan="2" class="fc-route4" |'''{{Ruby|第３１話|だい３１わ}}：{{Ruby|引き裂かれる|ひきさかれる}}{{Ruby|過去|かこ}} Scenario 31 - Shattered Past'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Nikick; (2) Defeat Eliphas.'''Victory Condition (includes hidden):''' (1) Defeat Nikick or 4th turn reached; (2) Defeat Eliphas. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship or Virgola Kai is defeated. '''SR Point:''' Defeat all other enemies, then defeat Nikick within 3 turns. '''Unit Acquisition:'''
*Chaos Leo (Lowen)

| colspan="2" |'''Victory Condition:''' (1) Move Nirvash or Terminus 909 adjacent to the Chiram Assault Aerial Mothership; (2) Defeat Eliphas. '''Defeat Condition:''' (1) Ally battleship, Gunleon, Terminus 909, or the Chiram Assault Aerial Mothership is defeated; (2) Ally battleship, Gunleon, Terminus 909, or Shurouga is defeated. '''SR Point:''' Defeat all other enemies, then achieve the first victory condition within 3 turns. '''Unit Acquisition:'''
*Chaos Leo (Lowen)
*Shurouga (Asakim) (becomes an enemy and retreats after the first victory condition is fulfilled)
*Terminus 909 (Holland) and Gunleon (Land) become unavailable for the rest of the stage after the first victory condition is fulfilled.
'''Unit Acquisition (post-stage):'''
*Nirvash (Renton)
|-
| colspan="2" class="fc-route3" |'''{{Ruby|第３２話|だい３２わ}}：{{Ruby|悲しみ|かなしみ}}という{{Ruby|力|ちから}} Scenario 32 - The Power Called Sadness'''
| colspan="2" class="fc-route4" |'''{{Ruby|第３２話|だい３２わ}}：{{Ruby|俺|おれ}}が{{Ruby|俺|おれ}}である{{Ruby|ため|為}}に Scenario 32 - So I Can Be Myself'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Gunleon; (2) Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Defeat Gunleon or 4th turn reached; (2) Defeat all enemies. '''Defeat Condition:''' (1) Virgola Kai (VWFS) is defeated; (2) Ally battleship is defeated. '''SR Point:''' After enemy reinforcements arrive, defeat all enemies within 4 turns. '''Secret Requirements:'''
*Bolinoak Sammahn (Sarah Zabiarov) & Palace Athene (Reccoa) (1/9)
**Take the Gibraltar Base route.
*ZEUTH Points
**To obtain a ZEUTH Point, take the Gibraltar Base route.
*Aki Points
**To obtain 3 Aki Points, take the Border Patrol route.
'''Unit Acquisition:'''
*Virgola Kai (Setsuko) becomes the Virgola Kai (VWFS) (Setsuko).
*Virgola Kai (VWFS) (Setsuko) becomes the Virgola Glory (Setsuko).
*Setsuko's ????? is unlocked, and is revealed to be the "SP Recovery" ability. Setsuko gains +5 to all stats.
'''Route-Exclusive Bazaar Units:'''
*To purchase the Asshimar from the Bazaar earlier, take the Gibraltar Base route.

| colspan="2" |'''Victory Condition:''' Defeat Shurouga. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat all other enemies, then defeat Shurouga within 4 turns. '''Secret Requirements:'''
*Xabungle [Unit 2] (1/4)
**Take the Look After the Ship route.
*Spearhead (Charles) & Spearhead (Ray) (1/3)
**Take the Search for Renton route.
*Haro (4/6)
**Take the Search for Renton route.
*Plasma Gimmick & O-Thunder attacks & Powerups for Big O [Early] (1/2)
**Take the Search for Renton route.
'''Unit Acquisition:'''
*Gunleon gains the "Pain Shouter" and "The Heat Crusher" attacks, the Resupply ability, and +30 EN & +10 Mobility.
'''Unit Acquisition (post-stage):'''
*Warning: If you decide to take the Search for Renton route, before moving onto the route-split, '''Chill needs be set as either the Walker Gallia's main pilot or its sub-pilot''', otherwise a disadvantageous bug will happen.
**If Chill is not set as the main pilot nor the sub-pilot of the Walker Gallia, Jiron will be forced to be the main pilot of Walker Gallia, and the sub-pilot slot of Walker Gallia will be kept empty. This cannot be changed during the first two stages of the route split.
**If Chill is set as the main pilot of the Walker Gallia, Jiron will be forced to be the sub-pilot of Walker Gallia. This cannot be changed during the first two stages of the route split.
'''Route-Exclusive Bazaar Units:'''
*To purchase the Mexbrute from the Bazaar earlier, take the Look After the Ship route.

|- class="fc-route-h"
| width="25%" |'''セツコをジブラルタル基地に向かわせる Have Setsuko head to the Gibraltar Base''' (Lowen) Zeta Gundam Gundam SEED Destiny Turn A Gundam
| width="25%" |'''セツコを周辺の警戒へ当たらせる Have Setsuko take part in border patrol''' (Lowen) Zambot Gravion God Sigma Mazinger/Grendizer
| width="25%" |'''レントンを探しに行く Search for Renton''' (Lowen) Gain Kei Jiron Chill Garrod
| width="25%" |'''艦で留守番 Look after the ship''' (Lowen) Eureka Seven Baldios King Gainer (minus Gain) Getter Robo G Gundam X (minus Garrod) Aquarion Xabungle (minus Jiron & Chill) Orguss (minus Kei)

|-
| class="fc-route3" |'''{{Ruby|第３３話|だい３３わ}}：{{Ruby|Ｚ|ゼータ}}の{{Ruby|鼓動|こどう}} Scenario 33 - Pulse of Zeta'''
| class="fc-route1" |'''{{Ruby|第３３話|だい３３わ}}：{{Ruby|星|ほし}}が{{Ruby|輝く|かがやく}}{{Ruby|時|とき}} Scenario 33 - When the Stars Shine'''
| class="fc-route2" |'''{{Ruby|第３３話|だい３３わ}}：ロンリー・ランナウェイ Scenario 33 - Lonely Runaway'''
| class="fc-route4" |'''{{Ruby|第３３話|だい３３わ}}：{{Ruby|遠き|とおき}}{{Ruby|友|とも}}へ Scenario 33 - O Distant Friend...'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Messala.'''Victory Condition (includes hidden):''' (1) Defeat all enemies or 6th turn reached; (2) Defeat Messala. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship is defeated. '''SR Point:''' Defeat all enemies within 5 turns. '''Unit Acquisition:'''
*Kamille moves to the Zeta Gundam
*Zeta Gundam/Waverider (Kamille) aka Ζ Gundam
**Inherits upgrades from Gundam Mk-II
*Methuss/Methuss (MA) [2nd] (Fa)
*Radish (Henken)
*The Gundam Mk-II becomes unavailable for the rest of the stage after Kamille moves to the Zeta Gundam.
'''Unit Acquisition (post-stage):'''
*Re-GZ (No pilot)
*Gundam Mk-II gains the G-Defenser exchangeable parts
**Super Gundam form (using G-Defenser parts)
**(Unfortunately, the G-Defenser parts cannot be equipped by the black Gundam Mk-II to allow you to have a black Super Gundam.)
*Hyaku Shiki gains the "Mega Bazooka Launcher" attack.
**Obtained if the secret wasn't met earlier after stage 19 (Pacific route).
*[Bazaar unit - Gibraltar Base route] Asshimar

|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat the Bandock.'''Victory Condition (includes hidden):''' (1) Defeat 7 enemy squads or 3rd turn reached; (2) Defeat the Bandock. '''Defeat Condition:''' (1) King Beal or Zambot 3 is defeated; (2) King Beal or Zambot 3 is defeated, or 8 turns pass. '''SR Point:''' Prevent the King Beal from taking damage. '''Secret Requirements:'''
*Aki Points +3
**Obtained upon stage clear.
'''Unit Acquisition (post-stage):'''
*Zambot 3 gains the "Ion Cannon" combination attack with King Beal, and +20 EN. This attack cannot be used by the King Beal.

|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) All allies are defeated; (2) Gundam Double X is defeated; (3) Spearhead (Charles) or Spearhead (Ray) is defeated. '''SR Point:''' Clear the map within 4 turns. '''Unit Acquisition:'''
*G-Falcon (Paula)
**Upgrades are inherited from and permanently shared with Gundam Double X.
*Esperanza (Enil)
*Gundam Double X can combine with the G-Falcon.
*Spearhead [blue] (Charles)
*Spearhead [red] (Ray)

|'''Victory Condition:''' (1) Defeat the Mecha Yousaiki; (2) Defeat all enemies; (3) After entering the Closed Space, defeat Jolar within 2 turns.'''Victory Condition (includes hidden):''' (1) Defeat the Mecha Yousaiki or 4th turn reached; (2) After Aldebaran reinforcements arrive, defeat 2 enemy platoons, or 1 turn passes and then enemy phase reached; (3) After entering the Closed Space, defeat Jolar within 2 turns. '''Defeat Condition:''' (1) Ally battleship is defeated; (2) Ally battleship, Baldios or Jolar is defeated; (3) Ally battleship or Baldios is defeated; or 3 turns pass after entering the Closed Space. '''SR Point:''' Defeat the Mecha Yousaiki within 3 turns. '''Unit Acquisition:'''
*Jolar (Flick) (becomes an enemy in the last part of the stage)
'''Unit Acquisition (post-stage):'''
*Baldios gains the "Pulsaber Dringing" attack, +500 HP, +20 EN, +5 Mobility, +5 Hit Rate, and +200 Armor.
*Grendizer/Spazer (Duke)
*Marine Spazer (Hikaru)
*[Bazaar unit - Look After the Ships route] Mexbrute

|-
| class="fc-route3" |'''{{Ruby|第３４話|だい３４わ}}：{{Ruby|偽り|いつわり}}の{{Ruby|女王|じょおう}}, {{Ruby|仮面|かめん}}の{{Ruby|姫|ひめ}} Scenario 34 - The False Queen and the Masked Princess'''
| class="fc-route1" |'''{{Ruby|第３４話|だい３４わ}}：この{{Ruby|星|ほし}}は{{Ruby|誰|だれ}}のもの Scenario 34 - To Whom Does This Planet Belong?'''
| class="fc-route2" |'''{{Ruby|第３４話|だい３４わ}}：ストレンジ・コンタクト Scenario 34 - Strange Contact'''
| class="fc-route4" |'''{{Ruby|第３４話|だい３４わ}}：{{Ruby|怒り|いかり}}の{{Ruby|鉄道|てつどう}}{{Ruby|王|おう}} Scenario 34 - The Angry Railroad King'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) Move ∀ Gundam adjacent to the Soleil.'''Victory Condition (includes hidden):''' Defeat 2 enemy squads, or Methuss is reduced below 10% HP, or battle Gaplant (Yazan), or 3rd turn reached; (2) Move ∀ Gundam adjacent to the Soleil. '''Defeat Condition:''' (1) Methuss (Reccoa) is defeated; (2) ∀ Gundam or the Soleil is defeated, or the Soleil reaches the edge of the map. '''SR Point:''' Defeat all Phantom Pain enemies (the red team) before moving ∀ Gundam adjacent to the Soleil. '''Secret Requirements:'''
*Bolinoak Sammahn (Sarah Zabiarov) & Palace Athene (Reccoa) (2/9)
**Sortie Katz in any unit. Have Katz's unit battle Sarah's Marasai.
'''Unit Acquisition:'''
*Battleships cannot be deployed for this stage.
**Impulse Gundam cannot use Tactical Reload for this stage.
*Methuss/Methuss (MA) (Reccoa)
**All upgrades on Reccoa's Methuss are refunded.
*SUMO Gold Type (Harry)

|'''Victory Condition:''' (1) Defeat the Elder Battleship; (2) Defeat all enemies. '''Defeat Condition:''' The King Beal, God Sigma or the Soleil is defeated. '''SR Point:''' Defeat all other enemies, then defeat the Elder Battleship before the Soleil leaves the map. '''Unit Acquisition:'''
*Grendizer/Spazer (Duke)
*Marine Spazer (Hikaru)
*Mazinger Z, Great Mazinger, and Grendizer gain the "Triple Mazinger Blade" combination attack. Mazinger Z must be piloted by Kouji, and Great Mazinger must be piloted by Tetsuya.
*God Sigma gains the "Sigma Breast Musouken" attack, +20 EN.

|'''Victory Condition:''' (1) Defeat Ishkick Commander (Robert); (2) Defeat Golem (Asuham), Galapagos (Horla), Dran, and Beck The Great RX3. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Nikick Olson, Nikick Athena, Walker Gallia, Emperanza, or Big O is defeated; (3) Nikick Olson, Nikick Athena, Walker Gallia, Emperanza, Big O, or Spearhead is defeated. '''SR Point:''' Clear the map within 6 turns. '''Secret Requirements:'''
*Plasma Gimmick & O-Thunder attacks & Powerups for Big O [Early] (2/2)
**Have Roger's Big O battle Beck's Beck The Great RX3, and have both units survive the battle. An event will trigger where the Big O unlocks new weaponry. If not met, the attacks/powerups will be gained after the stage.
'''Unit Acquisition:'''
*Nikick Olson (Olson)
*Nikick Athena (Athena)
*Spearhead [blue] (Charles)
*Big O (Roger)
*Big O gains the "Plasma Gimmick" and "O-Thunder" attacks, "B" rank in Sky terrain for the "Close Quarters Combat" and "Sudden Impact" attacks.
'''Unit Acquisition (post-stage):'''
*Regroup with the '''Look after the ship''' team
*Big O gains the "Plasma Gimmick" and "O-Thunder" attacks, "B" rank in Sky terrain for the "Close Quarters Combat" and "Sudden Impact" attacks. (if not unlocked during the stage)
|'''Victory Condition:''' Defeat Dominator. '''Defeat Condition:''' Ally battleship or King Gainer is defeated. '''SR Point:''' Defeat all other enemies, and then defeat Dominator within 5 turns. '''Unit Acquisition:'''
*The Groma (Shaiya) becomes unavailable for this stage after the battle begins.
'''Unit Acquisition (post-stage):'''
*Regroup with the '''Search for Renton''' team
*Terminus 909 (Holland)
*Terminus 606 (Hilda)
*Terminus 808 (Matthieu, Stoner)
*Gekkougou (Talho, Kengou, Happ)
|-
| class="fc-route3" |'''{{Ruby|第３５話|だい３５わ}}：{{Ruby|戦闘神|せんとうじん}}の{{Ruby|影|かげ}} Scenario 35 - Shadow of the War God'''
| class="fc-route1" |'''{{Ruby|第３５話|だい３５わ}}：{{Ruby|嘆き|なげき}}のロザリオ Scenario 35 - Rosary of Grief'''
| class="fc-route2" |'''{{Ruby|第３５話|だい３５わ}}：モーニング・グローリー Scenario 35 - Morning Glory'''
| class="fc-route4" |'''{{Ruby|第３５話|だい３５わ}}：オーバー・バトル Scenario 35 - Over Battle'''

|-
|'''Victory Condition:''' Reduce the Soleil to 10% HP within 7 turns. '''Defeat Condition:''' Ally battleship, SUMO Gold Type, or the Soleil is defeated, or 8th turn reached. '''SR Point:''' Defeat all other enemies, then achieve the victory condition. '''Secret Requirements:'''
*Bolinoak Sammahn (Sarah Zabiarov) & Palace Athene (Reccoa) (3/9)
**Sortie either Kamille or Katz in any unit. Have either Kamille's unit or Katz's unit defeat Sarah's Messala.
*ZEUTH Points +1
**Obtained upon stage clear.
'''Unit Acquisition:'''
*SUMO Gold Type (Harry)
*Freedom Gundam (Kira) (ally NPC)

|'''Victory Condition:''' (1) Defeat Gran Trooper; (2) Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Defeat Gran Trooper or 4 enemy squads; (2) Defeat all enemies. '''Defeat Condition:''' (1) Ally battleship or God Gravion is defeated; (2) Ally battleship, God Gravion, or Gran Trooper is defeated. '''SR Point:''' Clear the map within 5 turns. '''Unit Acquisition:'''
*Gran Trooper (Fei) (ally NPC)
**Generic Phantom Pain platoons that are still on the map after fulfilling 1st victory condition. (ally NPCs)
**Gells-Ghe & Dagger-L x2 (Federation Soldiers)
**Gells-Ghe & Windam x2 (Federation Soldiers) (2 platoons)
**Asshimar & Gaplant x2 (Titans)
**Marasai & Hi-Zaku x2 (Titans) (3 platoons)
*(Mizuki & Leele)
*God Gravion loses the "Graviton Rifle" and "Gravity Crescent" attacks, and -500 base damage for the "Choujuuken" attack.

|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Spearhead (Charles) & Spearhead (Ray).'''Victory Condition (includes hidden):''' (1) Defeat all enemies or 4th turn reached; (2) Defeat Spearhead (Charles) & Spearhead (Ray). '''Defeat Condition:''' Any ally unit is defeated; (2) Ally battleship or Nirvash is defeated. '''SR Point:''' Defeat all other enemies, then defeat Spearhead (Charles) & Spearhead (Ray) within 6 turns. '''Secret Requirements:'''
*Spearhead (Charles) & Spearhead (Ray) (2/3) + (3/3)
**Have Renton persuade both Charles and Ray in any order.
**Have Renton's Nirvash defeat Charles's Spearhead as well as Ray's Spearhead in any order. If conditions are met, Charles's Spearhead and Ray's Spearhead will appear as reinforcements in the first half of the final stage (Normal or better ending).
*Haro (5/6)
**Purchase the Rare Wheel (レアなウィール) from the Bazaar.
'''Unit Acquisition:'''
*Eureka rejoins as a sub-pilot of the Nirvash.
*Nirvash (Renton, Eureka)
*Renton gains +5 to Melee and Shooting stats, and the ability to learn the "Bravery" spirit command.
**All PP gained by Eureka is transferred to Renton.
*Eureka becomes able to learn the "Zeal" spirit command.
'''Unit Acquisition (post-stage):'''
*Renton can now be trained using PP.
*[Bazaar unit - Search for Renton route] Mexbrute

|'''Victory Condition:''' Defeat the Overdevil. '''Defeat Condition:''' Ally battleship or King Gainer is defeated. '''SR Point:''' Defeat all other enemies, then defeat the Overdevil within 6 turns. '''Secret Requirements:'''
*Xabungle [Unit 2] (2/4) + (3/4)
**Defeat Brockary (Timp).
**Purchase the Computer Core (コンピューターコア) from the Bazaar.
'''Unit Acquisition:'''
*Big O gains the "Plasma Gimmick" and "O-Thunder" attacks, "B" rank in Sky terrain for the "Close Quarters Combat" and "Sudden Impact" attacks.
*Gainer's "Gamer" skill can now change into the "Game Champ" skill if Gainer obtains 100 kills.
'''Unit Acquisition (post-stage):'''
*Regroup with Renton and Eureka
*Terminus 909 (Holland)
*Terminus 606 (Hilda)
*Terminus 808 (Matthieu, Stoner)
*Gekkougou (Talho, Kengou, Happ)

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第３６話|だい３６わ}}：{{Ruby|慟哭|どうこく}}の{{Ruby|星空|ほしぞら}} Scenario 36 - The Wailing Night Sky'''
| colspan="2" class="fc-route4" |'''{{Ruby|第３６話|だい３６わ}}：{{Ruby|示される|しめされる}}{{Ruby|明日|あした}} Scenario 36 - Indicative Tomorrow'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Destroy Gundam; (2) Defeat Destroy Gundam and Psycho Gundam.'''Victory Condition (includes hidden):''' (1) Battle Destroy Gundam or Windam (Neo), or 4th turn enemy phase reached; (2) Defeat Destroy Gundam and Psycho Gundam. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat all other enemies before defeating Destroy Gundam and Psycho Gundam, within 6 turns. '''Secret Requirements:'''
*Gaia Gundam (Stella) Points +1
**Sortie Shinn's Impulse Gundam. Have Shinn's Impulse Gundam defeat Stella's Destroy Gundam.
*Gaia Gundam (Stella) Points +3
**Stella's Destroy Gundam is defeated while Four's Psycho Gundam is on the map.
***(If you use a MAP attack to defeat both at the same time, this will only give you the Gaplant (Four) +3 and NOT the Gaia Gundam (Stella) +3.)
*Gaia Gundam (Stella) Points +2
**Four's Psycho Gundam is defeated while Stella's Destroy Gundam is on the map, but this fails to give you enough points to fulfill the conditions to save Four (if you don't have enough SR points).
*Gaia Gundam (Stella) (1/1)
**By the end of this map, you must obtain at least 8 Gaia Gundam (Stella) Points (or at least 7 Points and 28+ SR points). Stella and her Gaia Gundam (not the Destroy Gundam) will join you later in the game. See ZEUTH route stage 51 and ZAFT route stage 56 for more information.
*Gaplant (Four) Points +1
**Sortie Kamille in any unit. Have Kamille's unit defeat Four's Psycho Gundam.
*Gaplant (Four) Points +3
**Four's Psycho Gundam is defeated while Stella's Destroy Gundam is on the map.
***(If you use a MAP attack to defeat both at the same time, this will only give you the Gaplant (Four) +3 and NOT the Gaia Gundam (Stella) +3.)
*Gaplant (Four) Points +2
**Stella's Destroy Gundam is defeated while Four's Psycho Gundam is on the map, but this fails to give you enough points to fulfill the conditions to save Stella (if you don't have enough SR points).
*Gaplant (Four) (1/1)
**By the end of this map, you must obtain at least 5 Gaplant (Four) Points (or at least 4 Points and 28+ SR Points). Four and her Gaplant (not the Psycho Gundam) will join you during stage 38.
*ZEUTH Points +1
**Meet the conditions to obtain the Gaia Gundam and to recruit Stella.
*Great Booster attack for Great Mazinger [Early] (2/2)
**Purchase the Photon Power Research Report ({{Ruby|光子力|こうしりょく}}{{Ruby|研究|けんきゅう}}レポート) from the Bazaar. The two items will combine to form the Great Booster for Great Mazinger. If the conditions are not met, the attack will be obtained during the stage 41 pre-deployment intermission.
'''Unit Acquisition:'''
*Archangel (Murrue) (ally NPC)
*Freedom Gundam (Kira) (ally NPC)
**Kei (Orguss) & M.Lover Maaie (Maaie) & M.Lover Lieea (Lieea) (ally NPCs)
**Gundam Double X (Garrod) & Gundam X (Jamil) & G-Falcon (Paula) (ally NPCs)
**Getter Dragon (Ryoma) (ally NPC)
**Baldios (Marin) (ally NPC)
'''Unit Acquisition (post-stage):'''
*Great Mazinger gains the "Great Booster" attack.
*[Bazaar unit - Border patrol route] Asshimar

| colspan="2" |'''Victory Condition:''' Defeat Destroy Gundam. '''Defeat Condition:''' Ally battleship or Freedom Gundam is defeated. '''SR Point:''' Defeat all other enemies, then defeat Destroy Gundam within 6 turns. '''Secret Requirements:'''
*ZEUTH Points +1
**Shinn's Force Impulse Gundam (as a NPC) battles Stella's Destroy Gundam.
*ZEUTH Points +2
**Shinn's Force Impulse Gundam (as a NPC) defeats Stella's Destroy Gundam.
*ZEUTH Points -1
**Kira's Freedom Gundam defeats Stella's Destroy Gundam.
*Shadow Angel Feather (4/5)
**Purchase the Chiram-made Bike (チラム{{Ruby|製|せい}}のバイク) from the Bazaar.
'''Unit Acquisition:'''
*Freedom Gundam (Kira)
*Archangel (Murrue, Neumann, Chandra)
*Minerva (Talia) (ally NPC)
*Force Impulse Gundam (Shinn) (ally NPC)
*Saviour Gundam (Athrun) & Blaze Zaku Phantom (Rey) & Gunner Zaku Warrior (Lunamaria) (ally NPCs)
**Zeta Gundam (Kamille) & Hyaku Shiki (Quattro) & Re-GZ (Amuro) (ally NPCs)
**Mazinger Z (Kouji) (ally NPC)
**Great Mazinger (Tetsuya) (ally NPC)
**Zambot 3 (Kappei) (ally NPC)
'''Unit Acquisition (post-stage):'''
*[Bazaar unit - Land route] Jenice Kai Enil Custom

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第３７話|だい３７わ}}：{{Ruby|新|しん}}{{Ruby|地球|ちきゅう}}{{Ruby|連邦|れんぽう}}{{Ruby|再編|さいへん}} Scenario 37 - Reshuffle in the New Earth Federation'''
| colspan="2" class="fc-route4" |'''{{Ruby|第３７話|だい３７わ}}：{{Ruby|粛清|しゅくせい}}の{{Ruby|嵐|あらし}} Scenario 37 - Purging Storm'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat all enemies by turn 4, player phase. '''Secret Requirements:'''
*Bolinoak Sammahn (Sarah Zabiarov) & Palace Athene (Reccoa) (4/9)
**Sortie either Kamille or Katz in any unit. Have either Kamille's unit or Katz's unit battle Sarah's Messala.

| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat Gundam Virsago CB and Gundam Ashtaron HC within 3 turns. Both retreat below 8000 HP.

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第３８話|だい３８わ}}：{{Ruby|踊る|おどる}}{{Ruby|悪夢|あくむ}} Scenario 38 - Dancing Nightmare'''
| colspan="2" class="fc-route4" |'''{{Ruby|第３８話|だい３８わ}}：{{Ruby|仕組まれた|しくまれた}}{{Ruby|決戦|けっせん}} Scenario 38 - Preplanned Showdown'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Freedom Gundam or the Archangel. (2) Defeat all enemies.'''Victory Condition (including hidden):''' (1) Defeat Freedom Gundam or the Archangel; alternatively but does not achieve the SR Point, Force Impulse Gundam is defeated; alternatively but does not achieve the SR Point, 5th turn reached. (2) Defeat all enemies. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Achieve the first victory condition within 4 turns. '''Secret Requirements:'''
*ZEUTH Points +2
**Shinn's Force Impulse Gundam is defeated while Kira's Freedom Gundam is on the map.
*ZEUTH Points +1
**Defeat Kira's Freedom Gundam without ever having Shinn's Force Impulse Gundam battle it.
*Gaplant (Four)
**If the conditions are met, Four and her Gaplant will join you after the 1st victory condition is fulfilled.
'''Unit Acquisition:'''
*Force Impulse Gundam gains the "Excalibur" attack.
*Daitarn 3/Daifighter/Daitank (Banjou)
*Gaplant (Four)
*Only the Force form of Impulse Gundam is available for this stage.
**Force Impulse Gundam cannot use Tactical Reload for this stage.

| colspan="2" |'''Victory Condition:''' Defeat Force Impulse Gundam or the Minerva.'''Victory Condition (including hidden):''' Defeat Force Impulse Gundam or the Minerva; alternatively but does not achieve the SR Point, Freedom Gundam is defeated; alternatively but does not achieve the SR Point, 5th turn reached. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Achieve the victory condition within 4 turns. '''Secret Requirements:'''
*ZEUTH Points +1
**Defeat Shinn's Force Impulse Gundam.
*ZEUTH Points -1
**Kira's Freedom Gundam is defeated.
'''Unit Acquisition (post-stage):'''
*Freedom Gundam (Kira)
*Archangel (Murrue, Neumann, Chandra)
*Orguss II/Orguss II Flyer (Olson)

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第３９話|だい３９わ}}：レイズ・ザ・フラッグ Scenario 39 - Raise the Flag'''
| colspan="2" class="fc-route4" |'''{{Ruby|第３９話|だい３９わ}}：スタート・イット・アップ Scenario 39 - Start It Up'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all Coralians.'''Victory Condition (including hidden):''' Defeat 75 Coralians units in total, or 6th turn reached. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat at least 75 Coralians within 5 turns.

| colspan="2" |'''Victory Condition:''' Defeat all enemies.'''Victory Condition (including hidden):''' (1) Defeat the Federation Army Aerial Battleship (Jurgens) or Nirvash theEND, or 4th turn reached. (2) After Coralian reinforcements arrive, defeat all enemies, or 3 turns pass. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' After the Coralians arrive, defeat all enemies within 3 turns. '''Secret Requirements:'''
*Hero's Mark (5/5)
**Go to the Bazaar to obtain the Hero's Mark enhancement part.
'''Unit Acquisition:'''
*Nirvash (Renton, Eureka) becomes Nirvash spec2 (Renton, Eureka).
*Orguss and Orguss II gain the "Orguss Combination" combination attack.

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第４０話|だい４０わ}}：インパクト･アゲイン Scenario 40 - Impact Again'''
| colspan="2" class="fc-route4" |'''{{Ruby|第４０話|だい４０わ}}：{{Ruby|崩壊|ほうかい}}{{Ruby|序曲|じょきょく}} Scenario 40 - Prelude to Destruction'''

|-
| colspan="2" |'''Victory Condition:''' Reduce the Garuda-class below 2000 HP.'''Victory Condition (includes hidden):''' Reduce the Garuda-class below 2000 HP; alternatively but does not achieve the SR point, 7th turn reached. '''Defeat Condition:''' Ally battleship or the Garuda-class is defeated. '''SR Point:''' Achieve the victory condition within 6 turns. '''Secret Requirements:'''
*Aki Points +1
**Defeat the Bandock (Butcher).

| colspan="2" |'''Victory Condition:''' (1) Defeat the Garuda-class; (2) Defeat the Garuda-class or Cherubim Sur le Kubera.'''Victory Condition (includes hidden):''' (1) 2nd turn reached; (2) Defeat the Garuda-class or Cherubim Sur le Kubera, or 7th turn reached. (Note: If you manage to defeat the Garuda-class on the first turn, the victory condition will instead become "Defeat all enemies, or 7th turn reached.") '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat Cherubim Sur le Kubera within 6 turns. '''Secret Requirements:'''
*Aki Points +2
**Defeat the Bandock (Butcher).
'''Unit Acquisition:'''
*Talho becomes able to learn the "Trust" and "Love" spirit commands.
* Talho loses the "Valor" spirit command.
*Moondoggie joins as a sub-pilot of the Gekkougou.

|} 

==Stages 41 - 47==
{| width="70%"
|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第４１話|だい４１わ}}：クロス・ポイント Scenario 41 - Cross Point'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat the Emaan Ship; (2) Defeat Ishkick Commander II (Roberto).'''Victory Condition (includes hidden):''' (1) Defeat the Emaan Ship or 4th turn reached; (2) Defeat Ishkick Commander II (Roberto). '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Clear the map within 5 turns. '''Secret Requirements:'''
*Ending Points +1
**Do not defeat any Emaan units aside from the Emaan Ship.
*Ending Points -1
**Defeat all Emaan units aside from the Emaan Ship.
*Ending Points +1
**Sortie Olson's Orguss II. Have Olson persuade Athena.
***(Note that Kei needs to persuade Athena first to fulfill the early Athena recruitment secret.)
*Nikick Athena (Athena) [Early] (1/2) + (2/2)
**Sortie both Kei's Orguss and Olson's Orguss II. Have Kei persuade Athena '''first'''.
**Have Olson persuade Athena second. An event will occur where Athena turns on Chiram and joins ZEUTH. If not met, Athena will join after the stage. The two steps must be done in the correct order, or else the event will not occur.
*Shadow Angel Feather (5/5)
**Go to the Bazaar to obtain the Shadow Angel Feather enhancement part.
'''Unit Acquisition:'''
*Nikick Athena (Athena)
*Great Mazinger gains the "Great Booster" attack.
**Obtained if the secret wasn't met earlier after stage 36 (Setsuko route), or playing on Land route.
*Mazinger Z, Great Mazinger, and Grendizer gain the "Triple Mazinger Blade" combination attack. Mazinger Z must be piloted by Kouji, and Great Mazinger must be piloted by Tetsuya.
'''Unit Acquisition (post-stage):'''
*Nikick Athena (Athena) (if not recruited during the stage)
*[Bazaar unit] Golem
*[Bazaar unit - Setsuko route] Galapagos
*[Bazaar unit - Setsuko route] Jenice Kai Enil Custom

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第４２話|だい４２わ}}：{{Ruby|終章|しゅうしょう}}{{Ruby|開幕|かいまく}} Scenario 42 - The Beginning of the End'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) Ally battleship, Zambot 3, Daitarn 3, or God Gravion is defeated; (2) Ally battleship, Zambot 3, Daitarn 3, or Gran Trooper is defeated. '''SR Point:''' Clear the map within 6 turns. '''Secret Requirements:'''
*Ending Points +1
**Fulfill the secret "Saving Aki".
*Saving Aki (1/1)
**At the start of this map, you must have obtained at least 7 Aki Points, or at least 4 Aki Points and 32 SR Points (Land route only). If conditions are met, Aki will survive the events of the stage.
'''Unit Acquisition:'''
*Gran Trooper (Fei)
*Daitarn 3 and Zambot 3 gain the "Space Combination" combination attack.
*God Gravion (Touga, Eiji, Runa, Eina)
**(Eina) - Eina leaves as the sub-pilot of God Gravion.

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第４３話|だい４３わ}}：{{Ruby|運命|うんめい}}と{{Ruby|自由|じゆう}}と Scenario 43 - Destiny and Freedom'''

|-
| colspan="2" |'''Victory Condition:''' [1st half] Defeat Saviour Gundam; [2nd half] Defeat the Salamis Kai.'''Victory Condition (includes hidden):''' [1st half] Defeat Saviour Gundam, or 4th turn reached; [2nd half] Defeat the Salamis Kai. '''Defeat Condition:''' [1st half] Any ally unit is defeated; [2nd half] (1) Eternal or SUMO Gold Type is defeated; (2) Eternal, SUMO Gold Type, or Turn X is defeated. '''SR Point:''' In the second half of the stage, defeat all other enemies, then defeat the Salamis Kai within 5 turns. '''Secret Requirements:'''
*ZEUTH Points +1 & Ending Points +1
**In the first half of the stage, do not defeat Athrun's Saviour Gundam. The map will be cleared upon reaching 4th turn.
*ZEUTH Points -1
**In the first half of the stage, have Shinn's Destiny Gundam defeat Athrun's Saviour Gundam.
*Ending Points -1
**In the first half of the stage, have Rey's Legend Gundam defeat Athrun's Saviour Gundam.
*GOUF Ignited (Yzak) (1/3)
**In the second half of the stage, have Kira's Strike Freedom Gundam defeat Yzak's GOUF Ignited.
'''Unit Acquisition (first half):'''
*The rest of ZEUTH is unavailable for this stage half.
*Shinn moves to the Destiny Gundam.
*Destiny Gundam (Shinn)
**Inherits upgrades from Impulse Gundam.
*Rey moves to the Legend Gundam.
*Legend Gundam (Rey)
**Inherits upgrades from Blaze Zaku Phantom.
*Saviour Gundam (Athrun)
*(Meyrin)
'''Unit Acquisition (second half):'''
*The rest of ZEUTH is unavailable for this stage half.
*SUMO Gold Type (Harry)
*Gaia Gundam [Red] (Waltfeld)
*Eternal (Lacus)
*Turn X (Gym)
*Kira moves to the Strike Freedom Gundam.
*Strike Freedom Gundam (Kira)
**Inherits upgrades from Freedom Gundam.
'''Unit Acquisition (post-stage):'''
*Lunamaria can now pilot the Impulse Gundam. Lunamaria moves to the Impulse Gundam.
*Amuro moves to the Nu Gundam.
*Nu Gundam (Amuro) aka ν Gundam
*Amuro's squad leader effect gains "Crit Rate +10%"
*Shinn can no longer pilot the Impulse Gundam.
*Rey can no longer pilot other units.

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第４４話|だい４４わ}}：{{Ruby|舞い降りる|まいおりる}}{{Ruby|太陽|たいよう}} Scenario 44 - The Falling Sun'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat the Artificial Sun; (2) After Sol Gravion arrives, defeat the Artificial Sun within 3 turns.'''Victory Condition (includes hidden):''' (1) Battle the Artificial Sun, or battle the Battle Airship (Aphrodia), or defeat 4 or more total enemy squads/ships, or 3rd turn is reached. (2) Midifo (Rubina) reaches the marked area, or defeat Battle Airship (Aphrodia), or defeat Battle Airship (Negros), or Midifo (Rubina) is defeated. (3) After God Gravion arrives, battle the Artificial Sun; alternatively, after the Shadow Angels arrive, defeat 5 or more total enemy squads/ships, or the next player phase is reached. (4) After Sol Gravion arrives, battle the Artificial Sun or the next player phase is reached. (5) Defeat the Artificial Sun, or Fixer-1 survives until the end of 3 turns after the arrival of Sol Gravion. '''Defeat Condition:''' (1) Ally battleship is defeated; (2) Ally battleship is defeated, or 3 turns pass after Sol Gravion appears.'''Defeat Condition (includes hidden):''' (1) Ally battleship is defeated; (2) Ally battleship is defeated; alternatively, 3 turns pass after Sol Gravion appears and Fixer-1 has been defeated. (The last defeat condition will trigger a special game over event unique to this stage.) '''SR Point:''' Defeat all other enemies before defeating the Artificial Sun. '''Secret Requirements:'''
*(Rubina) (1/2) + (2/2)
**After Rubina's Midifo (as an NPC) arrives:
**1) Prevent Rubina's Midifo from being defeated.
**2) While Rubina's Midifo is on the map, do any of:
***a) Assist in having Rubina's Midifo (as an NPC) reach the marked area to the northeast;
***b) Defeat Battle Airship (Aphrodia);
***c) Defeat Battle Airship (Negros).
**The Midifo will escape the battle and Rubina will join you after the stage. If the Midifo is defeated, it will escape anyway, but Rubina will not join you.
*Ending Points +1
**Meet the conditions to recruit Rubina.
*Ending Points +1
**Defeat the Artificial Sun.
*Ending Points +1
**Sortie Apollo's Solar Aquarion and have it defeat Futaba's Cherubim Soldier.
*Baldirosier attack for Baldios [1st method] (1/1)
**Sortie Marin's Baldios and have it survive the stage. Defeat the Artificial Sun using any unit. Marin's Baldios will use Baldirosier to defeat the Artificial Sun again in an event.
'''Unit Acquisition:'''
*Mizuki rejoins as a sub-pilot of the God Gravion.
*God Gravion (Touga, Eiji, Runa, Mizuki)
**God Gravion regains the "Graviton Rifle" attack.
*Gran Trooper (Fei)
*Touga, Eiji, Runa, and Mizuki move to the Sol Gravion.
*Leele and Eina rejoin as sub-pilots of the Sol Gravion.
*Sol Gravion (Touga, Eiji, Runa, Mizuki, Leele, Eina)
**Inherits upgrades from God Gravion.
*Fixer-1 (David)
*Midifo (Rubina) (ally NPC)
'''Unit Acquisition (post-stage):'''
*Baldios gains the "Baldirosier" attack.
*(Rubina)

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第４５話|だい４５わ}}：{{Ruby|遺産|いさん}}の{{Ruby|継承者|けいしょうしゃ}} Scenario 45 - Inheritors of the Legacy'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat all Destroy Gundams and Psycho Gundams.'''Victory Condition (includes hidden):''' (1) Have Walker Gallier (plus Xabungle) or Terminus 909 reach the marked point; alternatively, defeat either the Garuda-class, or Gundam Virsago CB, or Gundam Ashtaron HC. (2) Defeat all Destroy Gundams and Psycho Gundams. '''Defeat Condition:''' (1) Ally battleship, Terminus 909, Walker Gallia, or Xabungle is defeated; (2) Ally battleship is defeated; (3) Ally battleship, Terminus 909, or Doran is defeated. '''SR Point:''' Clear the map within 5 turns. '''Secret Requirements:'''
*Ending Points +1
**Have either Jiron's Walker Gallia (plus Elche's Xabungle) or Holland's Terminus 909 reach the marked area.
*Ending Points +1
**Prevent any Titans unit from being defeated.
*Xabungle [Unit 2] (4/4)
**Purchase the High-Power Gasoline Engine ({{Ruby|高性能|こうせいのう}}ガソリンエンジン) from the Bazaar. The two items will combine to form the second Xabungle.
'''Unit Acquisition:'''
*Elche becomes a Walker Machine pilot, and moves to the Xabungle's main-pilot seat.
**Elche's squad leader effect changes to "PLA weapon attack power +20%".
*Doran (Birin, Maria)
*Walker Gallia gains the "ICBM Throw" attack.
*Byarlant (Jerid) (neutral ally NPC)
*Byarlant (Mouar) (neutral ally NPC)
**Generic Titans (neutral ally NPCs)
**Byarlant x2 (Titans, subordinates of Jerid)
**Byarlant x2 (Titans, subordinates of Mouar)
**Gabthley x3 (Titans) (3 platoons)
*The Iron Gear and the Freeden (Sarah) are not available for this stage.
'''Unit Acquisition (post-stage):'''
*Xabungle [2nd] (No Pilot)
*[Bazaar unit] Messala
*[Bazaar unit] Gabthley

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第４６話|だい４６わ}}：{{Ruby|混迷|こんめい}}の{{Ruby|中|なか}}の{{Ruby|正義|せいぎ}} Scenario 46 - Justice Amongst the Chaos'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Crowda (Lancerow).'''Victory Condition (includes hidden):''' (1) Defeat 12 total enemy squads/ships, or 5th turn is reached; (2) Defeat Crowda (Lancerow). '''Defeat Condition:''' (1) Ally battleship is defeated; (2) Ally battleship or Strike Freedom Gundam is defeated. '''SR Point:''' Clear the map within 4 turns. '''Secret Requirements:'''
*Ending Points +1
**Defeat 12 total enemy squads/ships within 4 turns. Squads/ships defeated by Athrun's Murasame squad do not count towards this secret.
'''Unit Acquisition:'''
*Athrun's ????? is unlocked, and is revealed to be the "SEED" ability.
*Athrun moves to a Murasame.
*Athrun (Murasame) (neutral ally NPC)
**Generic Orb Soldiers (neutral ally NPCs)
**Murasame x2 (Orb Soldiers, subordinates of Athrun)
*Strike Freedom Gundam (Kira)
*Archangel (Murrue, Neumann, Chandra)
*SUMO Gold Type (Harry)
*Athrun moves to the Infinite Justice Gundam.
*Infinite Justice Gundam (Athrun)
**Inherits upgrades from Saviour Gundam.
*Akatsuki Oowashi (Neo)
*The Iron Gear (Elche) and the Freeden (Sarah) are not available for this stage.
'''Unit Acquisition (post-stage):'''
*Bertigo (Caris)
*(Despite Tiffa's departure, Gundam X / Gundam Double X continue to have access to the Satellite Cannon / Twin Satellite Cannon attacks.)

|- class="fc-route-h"
| width="50%" |'''Setsuko Route'''
| width="50%" |'''Land Route'''

|-
| class="fc-route3" |'''{{Ruby|第４７話|だい４７わ}}：カウント・ダウン Scenario 47 - Count Down'''
| class="fc-route4" |'''{{Ruby|第４７話|だい４７わ}}：{{Ruby|俺達|おれたち}}の{{Ruby|行き先|いきさき}} Scenario 47 - What Lies Ahead'''

|-
|'''Victory Condition:''' (1) Defeat the two enemy Virgolas; (2) Defeat either Chaos Leo, Chaos Anguis, or Chaos Caper. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship is defeated. '''SR Point:''' After the CHIMERA arrive, clear the map within 4 turns. '''Secret Requirements:'''
*Ending Points +1
**Defeat Virgola Unit 1 (Denzel) and Virgola Unit 2 (Toby) within 4 turns.
*ZEUTH Route (1/1)
**Option 1: By the end of this map, obtain at least 10 ZEUTH Points & 36+ SR Points, or be playing on New Game+. You will be allowed to choose between ZEUTH route and ZAFT route.
**Option 2: If the above conditions are not met, you must instead obtain at least 9 ZEUTH Points, or 7-8 ZEUTH Points & 36+ SR Points. You will automatically take ZEUTH route.
*Qubeley (Haman) (1/1)
**Take the ZEUTH route. Haman and her Qubeley will join you after stage 51.
*Legend Gundam (Rey) & Minerva (Talia) (1/5)
**Take the ZEUTH route.
*GOUF Ignited (Yzak) (2a/3)
**Taking the ZEUTH route will skip the step 2 requirement.
'''Unit Acquisition:'''
*Chaos Leo (Lowen) cannot act during this stage.
*Chaos Leo (Lowen)
**All upgrades on the Chaos Leo are refunded.
*Virgola Glory gains the "EN Regen (Small)" ability, +300 base damage for the "High Straight Turret" attack, and +500 base damage for the "Nautilus Carver" and the "The Glory Star" attacks.
*The Minerva (Talia) and the Argama (Bright) are not available for this stage.
**Impulse Gundam cannot use Tactical Reload for this stage.
'''Unit Acquisition (post-stage):'''
*Setsuko gains +5 to Skill stat.
*Terminus 909
*Holland moves to the Terminus 303
*Terminus 303 (Holland)
**Inherits upgrades from the Terminus 909.
*Corin Kapool (Corin)
*[Bazaar unit] Re-GZ [2nd]
*[Bazaar unit] Eagail
*'''If ZAFT route was chosen:'''
**Destiny Gundam (Shinn)
**Legend Gundam (Rey)
**Impulse Gundam (Lunamaria)
**Minerva (Talia, Arthur)
**Freeden (Sara, Tonya, Shingo)
**Iron Gear (Cotset)
**Elche and Fatman become Walker Machine pilots. The following effects take place '''only''' while being pilots.
***Elche's squad leader effect is changed to "PLA weapon attack power +20%".
***Elche can now learn the "Backup Attack" and "Resupply Skill" pilot skills.
***Fatman gains "Guts" and "Drive" spirit commands, the "Damage taken -30%" squad leader effect, and +8 SP. Fatman's pilot statistics are revealed (Melee, Ranged, Skill, Defense, Evade, Hit Rate, Air, Ground, Sea, Space). Fatman can be trained using PP.
**Fatman inherits all PP gained by Elche.
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat either Chaos Leo, Chaos Anguis, or Chaos Caper. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship is defeated; (3) Ally battleship, or Dogozzo (Yassaba) is defeated. '''SR Point:''' After the CHIMERA arrive, clear the map within 3 turns. '''Secret Requirements:'''
*Ending Points +1
**Have Land's Gunleon battle Asakim's Shurouga.
*(Yassaba)
**If conditions are met, Yassaba will join after the stage.
*Spirit of Steel (5/6)
**Purchase the Bouquet of Flowers ({{Ruby|花束|はなたば}}) from the Bazaar.
*ZEUTH Route (1/1)
**Option 1: By the end of this map, obtain at least 8 ZEUTH Points & 36+ SR Points, or be playing on New Game+. You will be allowed to choose between ZEUTH route and ZAFT route.
**Option 2: If the above conditions are not met, you must instead obtain at least 9 ZEUTH Points, or 7 ZEUTH Points & 36+ SR Points. You will automatically take ZEUTH route.
*Qubeley (Haman) (1/1)
**Take the ZEUTH route. Haman and her Qubeley will join you after stage 51.
*Legend Gundam (Rey) & Minerva (Talia) (1/5)
**Take the ZEUTH route.
*GOUF Ignited (Yzak) (2a/3)
**Taking the ZEUTH route will skip the step 2 requirement.
'''Unit Acquisition:'''
*(Despite the events in the stage, Mel can only unlock her ????? skill, which is revealed to be the "SP Recovery" skill upon reaching level 50.)
*Shurouga (Asakim) (becomes an enemy in the latter half of the stage)
*Dogozzo (Yassaba)
*Dogozzo (Kejinan)
*Dogozzo (Enge)
*Chaos Leo (Lowen)
**All upgrades on the Chaos Leo are refunded.
*The Minerva (Talia) and the Argama (Bright) are not available for this stage.
**Impulse Gundam cannot use Tactical Reload for this stage.
'''Unit Acquisition (post-stage):'''
*Terminus 909
*Holland moves to the Terminus 303
*Terminus 303 (Holland)
**Inherits upgrades from the Terminus 909.
*Corin Kapool (Corin)
*(Yassaba)
*[Bazaar unit] Re-GZ [2nd]
*[Bazaar unit] Eagail
*'''If ZAFT route was chosen:'''
**Destiny Gundam (Shinn)
**Legend Gundam (Rey)
**Impulse Gundam (Lunamaria)
**Minerva (Talia, Arthur)
**Freeden (Sara, Tonya, Shingo)
**Iron Gear (Cotset)
**Elche and Fatman become Walker Machine pilots. The following effects take place '''only''' while being pilots.
***Elche's squad leader effect is changed to "PLA weapon attack power +20%".
***Elche can now learn the "Backup Attack" and "Resupply Skill" pilot skills.
***Fatman gains the ability to learn "Guts" and "Drive" spirit commands, the "Damage taken -30%" squad leader effect, and +8 SP. Fatman's pilot statistics are revealed (Melee, Ranged, Skill, Defense, Evade, Hit Rate, Air, Ground, Sea, Space). Fatman can be trained using PP.
**Fatman inherits all PP gained by Elche.
|} 

==Stages 48 - 58==
{| width="70%"
|- class="fc-route-h"
| width="50%" |'''ZEUTHとして戦う Fight as part of ZEUTH''' (Requires [[Super_Robot_Wars/Z/Secrets#ZEUTHPoints|'''ZEUTH Points]])
| width="50%" |'''ザフトへ戻る Return to ZAFT''' (Default Route)

|-
| class="fc-route1" |'''{{Ruby|第４８話|だい４８わ}}：{{Ruby|楽園|らくえん}}の{{Ruby|追放者|ついほうしゃ}} Scenario 48 - Eden's Castaways'''
| class="fc-route2" |'''{{Ruby|第４８話|だい４８わ}}：{{Ruby|裏切り|うらぎり}}の{{Ruby|月光|げっこう}} Scenario 48 - Duplicitous Moonlight'''

|-
|'''Victory Condition:''' (1) Defeat the Mecha Yousaiki; (2) Defeat Aquarion Alpha. '''Defeat Condition:''' Ally battleship or Aquarion is defeated. '''SR Point:''' Defeat all other enemies, then defeat the Mecha Yousaiki within 4 turns. '''Secret Requirements:'''
*Ending Points +1
**Defeat Big Duo Inferno (Alan).
*Assault Type Aquarion [Early] (1/2) + (2/2)
**Defeat both Aquarion Omega and Aquarion Delta.
**Purchase the Vector Machine (ベクターマシン) from the Bazaar. The Assault Type Aquarion (Aquarion Alpha/Aquarion Omega/Aquarion Delta) will be obtained immediately. If not met, the unit will be obtained after stage 53.
'''Unit Acquisition:'''
*Only Aquarion pilot set C is available for this stage.
'''Unit Acquisition (post-stage):'''
*Eureka becomes able to learn the "Wish" spirit command.
*Aquarion Mars & (Sirius)
**Aquarion pilot sets A and C become unavailable.
*Aquarion Mars form is replaced by Aquarion Angel form.
*Aquarion Alpha/Aquarion Omega/Aquarion Delta (Only pilot set B: Reika/Jun/Tsugumi) aka Assault Type Aquarion

|'''Victory Condition:''' (1) Defeat the Elder Battleship; (2) Defeat GOUF Ignited (Yzak). '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat all other enemies, then defeat the Elder Battleship within 4 turns. '''Secret Requirements:'''
*Yzak (2b/3)
**Have Athrun persuade Yzak.
*Ending Points -1
**After the ZAFT arrive, defeat all ZAFT platoons/ships aside from Yzak's platoon.
'''Unit Acquisition:'''
*Strike Freedom Gundam (Kira) aka S Freedom Gundam
*Infinite Justice Gundam (Athrun) aka ∞ Justice Gundam
*Akatsuki (Neo) [base unit]
**Oowashi [Exchangeable parts]
**Akatsuki form [using Oowashi parts]
*Archangel (Murrue, Neumann, Chandra)
'''Unit Acquisition (post-stage):'''
*Akatsuki gains the Shiranui exchangeable parts
**Akatsuki form [using Shiranui parts]

|-
| class="fc-route1" |'''{{Ruby|第４９話|だい４９わ}}：{{Ruby|幻想|げんそう}}のメトロポリス Scenario 49 - Illusionary Metropolis'''
| class="fc-route2" |'''{{Ruby|第４９話|だい４９わ}}：{{Ruby|絶望|ぜつぼう}}の{{Ruby|光|ひかり}}, {{Ruby|希望|きぼう}}の{{Ruby|灯|ともしび}} Scenario 49 - Light of Despair, Glimmer of Hope'''

|-
|'''Victory Condition:''' (1) Defeat Big Duo Inferno; (2) Defeat the Kagaku Yousaitou. '''Defeat Condition:''' (1) Big O is defeated; (2) Ally battleship is defeated. '''SR Point:''' Defeat Big Duo Inferno within 4 turns. '''Secret Requirements:'''
*Big O Final Stage attack and powerups for Big O [Early] (ZEUTH route) (1/1)
**Have Roger's Big O survive until Alan's Big Duo Inferno is defeated. Roger's Big O will use Big O Final Stage to defeat Alan's Big Duo Inferno again in an event. If not met, the attack and powerups will be obtained during stage 58.
*Ending Points +1
**Have Beck's Beck The Great RX3 survive until Alan's Big Duo Inferno is defeated.
'''Unit Acquisition:'''
*Beck The Great RX3 (Beck, T-Bone, Dav)
*Dorothy joins as a sub-pilot for Big O.
*Big O gains the "Big O Final Stage" attack, +1 Movement, and +5 Hit Rate.
'''Unit Acquisition (post-stage):'''
*Mazinger Z, Great Mazinger, Grendizer, and Getter Dragon gain the "Final Dynamic Special" combination attack. Mazinger Z must be piloted by Kouji, and Great Mazinger must be piloted by Tetsuya.
**(Unlike ZAFT route, they will still gain the attack after the stage even if you didn't deploy any of them during the stage, it's just that you will not be able to see the FDS event.)
*King Gainer (Gainer)

|'''Victory Condition:''' [1st half] Defeat the Alexandria; [2nd half] Defeat all enemies.'''Victory Condition (includes hidden):''' [1st half] Defeat the Alexandria, or 3rd turn is reached; [2nd half] Defeat all enemies, or 7th turn is reached. '''Defeat Condition:''' [1st half] Any ally unit is defeated; [2nd half] (1) Ally battleship, Gundam Double X, or G-Falcon is defeated; (2) Ally battleship is defeated. '''SR Point:''' In the second half of the stage, defeat all enemies within 6 turns. '''Secret Requirements:'''
*Biosensor Abilities & Weapons & Powerups for Zeta Gundam [Early] [1st ZAFT route method] (1/1)
**In the second half of the stage, sortie Kamille in the Zeta Gundam. Have Kamille's Zeta Gundam defeat Yazan's Hambrabi. Kamille's Zeta Gundam will use Hyper Beam Sabre to defeat Yazan's Hambrabi again in an event. If not met, the attacks/powerups will be obtained at latest after stage 56.
*Bolinoak Sammahn (Sarah Zabiarov) & Palace Athene (Reccoa) (5/9) + (6/9)
**In the second half of the stage, sortie at least one of the pilots Quattro, Kamille, Fa or Emma in any unit. If not already picked, you also need to sortie at least one of the pilots Kamille or Fa in any unit.
**Have Quattro/Kamille/Fa/Emma's unit battle Reccoa's Palace Athene, and ensure both units survive the battle.
**Have either Kamille or Fa persuade Reccoa. The Persuade special option will only appear for Kamille and Fa after the required battle takes place.
*Ending Points +1
**In the second half of the stage, sortie at least one of the pilots Quattro, Kamille, Fa or Emma in any unit. Have Quattro/Kamille/Fa/Emma's unit battle Reccoa's Palace Athene, and ensure both units survive the battle.
***(All three secret requirements can be achieved by solely sortieing Kamille in the Zeta Gundam.)
*Spirit of Steel (6/6)
**Go to the Bazaar to obtain the Spirit of Steel enhancement part.
'''Unit Acquisition (1st half):'''
*The rest of ZEUTH is unavailable for this stage half.
*Radish (Henken)
*Meyrin rejoins as a sub-pilot of the Eternal.
*Eternal (Lacus, Waltfeld, Meyrin)
'''Unit Acquisition (2nd half):'''
*Radish (Henken)
*Strike Freedom Gundam gains the "METEOR Saber" and "METEOR Full Burst" combination attacks with Eternal. These attacks cannot be used by the Eternal.
*Infinite Justice Gundam gains the "METEOR Saber" and "METEOR Full Burst" combination attacks with Eternal. These attacks cannot be used by the Eternal.
*Zeta Gundam gains the "Beam Saber (Hyper)" and "Waverider Crash" attacks, "Biosensor" and "Psychofield" abilities.
*Gundam Double X (Garrod) and G-Falcon (Paula) become unavailable for the rest of the stage after an event.

|-
| class="fc-route1" |'''{{Ruby|第５０話|だい５０わ}}：{{Ruby|ヒト|人}}の{{Ruby|心|こころ}}, {{Ruby|テンシ|天翅}}の{{Ruby|夢|ゆめ}} Scenario 50 - A Human's Heart, An Angel's Dream'''
| class="fc-route2" |'''{{Ruby|第５０話|だい５０わ}}：{{Ruby|私|わたし}}はＤ．Ｏ．Ｍ．Ｅ．・・・・・・ Scenario 50 - I am D.O.M.E. ......'''

|-
|'''Victory Condition:''' (1) Defeat the Overdevil; (2) Defeat Cherubim Mars or Cherubim Iskulon within 3 turns after they appear; (3) Defeat Gainer B; (4) Defeat the Overdevil.'''Victory Condition (includes hidden):''' (1) Battle any of the following enemies: the Overdevil, Dominator, Gainer B, Jinba, or Golem; alternatively, 3rd turn is reached; (2) Defeat Cherubim Mars or Cherubim Iskulon within 3 turns after they appear; (3) Defeat Gainer B; (4) Defeat the Overdevil. '''Defeat Condition:''' (1) Ally battleship, Emperanza, or Aquarion is defeated; (2) Ally battleship, Emperanza, or Aquarion is defeated, or 4 turns pass after the Shadow Angels appear; (3) Ally battleship or Aquarion is defeated. '''SR Point:''' Defeat all other enemies before defeating the Overdevil. '''Secret Requirements:'''
*Ending Points +1
**Defeat Cherubim Iskulon (Moroha).
***(You must defeat Cherubim Iskulon (Moroha) to achieve the second victory condition, or else you will be unable to get this secret.)
*Ending Points -1
**Defeat Aquarion Alpha (Glenn).
*Ending Points -1
**Do not defeat Cherubim Mars (Sirius).
*Haro (6/6)
**Go to the Bazaar to obtain the Haro enhancement part.
'''Unit Acquisition (pre-deployment intermission):'''
*Panther (Gauli)
*Panther (Sara)
'''Unit Acquisition:'''
*King Gainer (Gainer)
*Jinba (Sara)
**Inherits upgrades from Sara's Panther.
*King Gainer gains the "Overheat" attack, an improved "Overskill" ability, +200 HP, +20 EN, +200 base damage for all existing attacks.
**Overskill : Activates when Oversense Level is at least 6 and 130+ Morale: +10+x Mobility, +10+x Hit Rate (x = Oversense Level × 2), +2 Movement, Shadow(50% chance of full evasion)
*Emperanza gains the "Black Hole" attack.
*Dorbeck (Kejinan)
*Dorbeck (Enge)
*Dorbeck (Jaboli)
*Only Aquarion pilot set E is available for this stage initially. After an event, the pilots are re-organized to pilot set D, and the unit changes to Aquarion Angel.
*Assault Type Aquarion is not available for this stage. (If you obtained it)
'''Unit Acquisition (post-stage):'''
*Dominator (Cynthia)
*Panther (Gauli)
*Panther
*[Bazaar unit] Brockary
*Freeden (Sarah, Tonya, Shingo)
*Iron Gear (Cotset)
*Elche and Fatman become Walker Machine pilots. The following effects take place '''only''' while being pilots.
**Elche's squad leader effect is changed to "PLA weapon attack power +20%".
**Elche can now learn the "Backup Attack" and "Resupply Skill" pilot skills.
**Fatman gains the ability to learn "Guts" and "Drive" spirit commands, the "Damage taken -30%" squad leader effect, and +8 SP. Fatman's pilot statistics are revealed (Melee, Ranged, Skill, Defense, Evade, Hit Rate, Air, Ground, Sea, Space). Fatman can be trained using PP.
*Fatman inherits all PP gained by Elche.

|'''Victory Condition:''' [1st half] Defeat the Alexandria and the Girty Lue within 5 turns; [2nd half] (1) Defeat Gundam Virsago CB or Gundam Ashtaron HC; (2) Defeat Gundam Virsago CB or Gundam Ashtaron HC, and Aquarion Alpha. (3)[Either Gundam Virsago CB or Gundam Ashtaron HC is defeated] Defeat Aquarion Alpha / [Aquarion Alpha is defeated] Defeat Gundam Virsago CB or Gundam Ashtaron HC.'''Victory Condition (includes hidden):''' [1st half] Defeat the Alexandria and the Girty Lue within 5 turns; [2nd half] (1) Battle Gundam Virsago CB or Gundam Ashtaron HC; alternatively, defeat 4 enemy squads; alternatively, 2nd turn reached; (2) Defeat Gundam Virsago CB or Gundam Ashtaron HC, and Aquarion Alpha. (3)[Either Gundam Virsago CB or Gundam Ashtaron HC is defeated] Defeat Aquarion Alpha / [Aquarion Alpha is defeated] Defeat Gundam Virsago CB or Gundam Ashtaron HC. '''Defeat Condition:''' [1st half] Ally battleship, ∀ Gundam, or Aquarion is defeated, or 6th turn reached; [2nd half] (1) Ally battleship is defeated; (2) Ally battleship or Aquarion is defeated. (3)[Aquarion Alpha is defeated] Ally battleship is defeated. '''SR Point:''' In the 1st half of the stage, defeat all enemies within 3 turns. '''Secret Requirements:'''
*(Tiffa)
**Option 1 [Land route Exclusive Method] (1/1)
***By the end of the first half of this stage, obtain at least 4 Tiffa Points. Tiffa will join as a sub-pilot alongside Garrod after the stage.
**Option 2 [Backstop Method] (1/2) + (2/2)
***You are playing as Land and did not meet the conditions for Option 1, or are playing as Setsuko.
***By the end of the first half of this stage, obtain at least 2 Tiffa Points and 40+ SR points. Tiffa will join as a sub-pilot alongside Garrod after the stage.
*G-Bits attack for Gundam X and Gundam Double X
**Option 1 [Land route Exclusive Method] (3/3)
***Go to the Bazaar to obtain the G-Bits attack for both the Gundam Double X and the Gundam X.
**Option 2 [Backstop Method] (1/3) + (2/3) + (3/3)
***You are playing as Land and did not meet the conditions for Option 1, or are playing as Setsuko.
***By the end of the first half of this stage, obtain at least 2 G-Bits Points and '''all 50''' SR points.
***Go to the Bazaar to obtain the G-Bits attack for both the Gundam Double X and the Gundam X.
*Ending Points +1
**In the second half of the stage, defeat both Frost brothers (Gundam Virsago CB (Shagia) and Gundam Ashtaron (Olba)) at the same time.
*Haro (6/6)
**Go to the Bazaar to obtain the Haro enhancement part.
'''Unit Acquisition [1st half]:'''
*Only Aquarion pilot set C is available for this stage half.
'''Unit Acquisition [2nd half]:'''
*∀ Gundam gains the "Moonlight Butterfly" and "Moonlight Butterfly (MAP)" attacks, +400 HP, +40 EN, +5 Hit Rate, +200 base damage for all existing attacks.
*Only Aquarion pilot set C is available for this stage half initially. After an event, the pilots are re-organized to Sylvia/Apollo/Reika, and the unit changes to Aquarion Angel.
*Aquarion Mars & (Sirius)
**Aquarion pilot sets A and C become unavailable.
*Aquarion Mars form is replaced by Aquarion Angel form.
'''Unit Acquisition (post-stage):'''
*Crowda (Lancerow)
*Freeden (Sarah, Tonya, Shingo)
*Iron Gear (Elche, Cotset, Fatman)
**Elche and Fatman return to the Iron Gear.
*(Tiffa)
**Tiffa joins as a sub-pilot alongside Garrod. In addition, Garrod is now able to use weapons that require the Newtype (X) skill.
*Gundam X and Gundam Double X gain the "G-Bits" attack.

|-
| class="fc-route1" |'''{{Ruby|第５１話|だい５１わ}}：{{Ruby|決別|けつべつ}} Scenario 51 - Farewell'''
| class="fc-route2" |'''{{Ruby|第５１話|だい５１わ}}：{{Ruby|紅い|あかい}}{{Ruby|道|みち}} Scenario 51 - The Crimson Path'''

|-
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleship, Destiny Gundam, Legend Gundam, or Impulse Gundam is defeated. '''SR Point:''' Clear the map within 6 turns. '''Secret Requirements:'''
*Biosensor Abilities & Weapons & Powerups for Zeta Gundam [Early] [1st ZEUTH route method] (1/1)
**Sortie Kamille in the Zeta Gundam. Have Kamille's Zeta Gundam defeat Yazan's Hambrabi. Kamille's Zeta Gundam will use Hyper Beam Sabre to defeat Yazan's Hambrabi again in an event. If not met, the attacks/powerups will be obtained at latest after stage 56.
*Bolinoak Sammahn (Sarah Zabiarov) & Palace Athene (Reccoa) (5/9) + (6/9)
**Sortie at least one of the pilots Quattro, Kamille, Fa or Emma in any unit. If not already picked, you also need to sortie at least one of the pilots Kamille or Fa in any unit.
**Have Quattro/Kamille/Fa/Emma's unit battle Reccoa's Palace Athene, and ensure both units survive the battle.
**Have either Kamille or Fa persuade Reccoa. The Persuade special option will only appear for Kamille and Fa after the required battle takes place.
*Ending Points +1
**Sortie at least one of the pilots Quattro, Kamille, Fa or Emma in any unit. Have Quattro/Kamille/Fa/Emma's unit battle Reccoa's Palace Athene, and ensure both units survive the battle.
***(All three secret requirements can be achieved by solely sortieing Kamille in the Zeta Gundam.)
*Gaia Gundam (Stella)
**If the conditions are met, Stella and her Gaia Gundam will join you after the stage.
*Qubeley (Haman)
**Haman and her Qubeley will join you after the stage.
'''Unit Acquisition:'''
*Strike Freedom Gundam (Kira) aka S Freedom Gundam
*Infinite Justice Gundam (Athrun) aka ∞ Justice Gundam
*Akatsuki (Neo) [base unit]
**Oowashi [Exchangeable parts]
**Akatsuki form [using Oowashi parts]
*Archangel (Murrue, Neumann, Chandra)
*Meyrin rejoins as a sub-pilot of the Eternal.
*Eternal (Lacus, Waltfeld, Meyrin)
*Strike Freedom Gundam gains the "METEOR Saber" and "METEOR Full Burst" combination attacks with Eternal. These attacks cannot be used by the Eternal.
*Infinite Justice Gundam gains the "METEOR Saber" and "METEOR Full Burst" combination attacks with Eternal. These attacks cannot be used by the Eternal.
*Zeta Gundam gains the "Beam Saber (Hyper)" and "Waverider Crash" attacks, "Biosensor" and "Psychofield" abilities.
*The only battleships available for this stage are the Argama (Bright) and the Minerva (Talia).
'''Unit Acquisition (post-stage):'''
*Legend Gundam (Rey)
**(Despite the Minerva leaving, the Blaze Zaku Phantom continues to remain in ZEUTH's ranks.)
*Minerva (Talia, Arthur)
*Akatsuki gains the Shiranui exchangeable parts
**Akatsuki form [using Shiranui parts]
*Gaia Gundam (Stella)
*Qubeley (Haman)

|'''Victory Condition:''' (1) Defeat Aquarion Alpha; (2) Defeat any one of the three units Aquarion Alpha or Cherubim Iskulon or Cherubim Mars, and defeat Mecha Yousaiki. '''Defeat Condition:''' Ally battleship or Aquarion is defeated. '''SR Point:''' Clear the map within 5 turns. '''Secret Requirements:'''
*Assault Type Aquarion [Early] (1/2) + (2/2)
**Defeat both Aquarion Omega and Aquarion Delta.
**Purchase the Vector Machine (ベクターマシン) from the Bazaar. The Assault Type Aquarion (Aquarion Alpha/Aquarion Omega/Aquarion Delta) will be obtained immediately. If not met, the unit will be obtained after stage 53.
*Ending Points +1
**Defeat Cherubim Iskulon (Moroha).
***(You must defeat Cherubim Iskulon (Moroha) to achieve the second victory condition, or else you will be unable to get this secret.)
*Ending Points -1
**Defeat Aquarion Alpha (Glenn).
'''Unit Acquisition (post-stage):'''
*King Gainer (Gainer)
*Eureka becomes able to learn the "Wish" spirit command.
*Aquarion Alpha/Aquarion Omega/Aquarion Delta (Only pilot set B: Reika/Jun/Tsugumi) aka Assault Type Aquarion
*[Bazaar unit] Brockary
|-
| class="fc-route1" |'''{{Ruby|第５２話|だい５２わ}}：{{Ruby|黒歴史|くろれきし}}の{{Ruby|真実|しんじつ}} Scenario 52 - The Truth of the Black History'''
| class="fc-route2" |'''{{Ruby|第５２話|だい５２わ}}：ゲインオーバー Scenario 52 - Gain Over'''

|-
|'''Victory Condition:''' [1st half] Defeat the Alexandria and the Girty Lue within 3 turns; [2nd half] Defeat Gundam Virsago CB or Gundam Ashtaron HC. '''Defeat Condition:''' [1st half] Ally battleship, ∀ Gundam, or Gundam Double X is defeated, or 4th turn is reached; [2nd half] Ally battleship or ∀ Gundam is defeated. '''SR Point:''' In the first half of the stage, defeat all other enemies before defeating the Alexandria and the Girty Lue. '''Secret Requirements:'''
*(Tiffa)
**Option 1 [Land route Exclusive Method] (1/1)
***By the end of the first half of this stage, obtain at least 4 Tiffa Points. Tiffa will join as a sub-pilot alongside Garrod at the beginning of the second half of the stage.
**Option 2 [Backstop Method] (1/2) + (2/2)
***You are playing as Land and did not meet the conditions for Option 1, or are playing as Setsuko.
***By the end of the first half of this stage, obtain at least 2 Tiffa Points and 40+ SR points. Tiffa will join as a sub-pilot alongside Garrod at the beginning of second half of the stage.
*G-Bits attack for Gundam X and Gundam Double X
**Option 1 [Land route Exclusive Method] (3/3)
***Go to the Bazaar to obtain the G-Bits attack for both the Gundam Double X and the Gundam X.
**Option 2 [Backstop Method] (1/3) + (2/3) + (3/3)
***You are playing as Land and did not meet the conditions for Option 1, or are playing as Setsuko.
***By the end of the first half of this stage, obtain at least 2 G-Bits Points and '''50+''' SR points. This means you can miss at most two SR Points.
***Go to the Bazaar to obtain the G-Bits attack for both the Gundam Double X and the Gundam X.
*Ending Points +1
**In the second half of the stage, defeat both Frost brothers (Gundam Virsago CB (Shagia) and Gundam Ashtaron (Olba)) at the same time.
*Ending Points +1
**In the second half of the stage, reduce the Turn X (Gym) below 50% HP.
'''Unit Acquisition:'''
*The only battleships available for this stage are the King Beal (Heizaemon), the Argama (Bright), the Archangel (Murrue), and the Eternal (Lacus).
'''Unit Acquisition (2nd half):'''
*(Tiffa)
**Tiffa joins as a sub-pilot alongside Garrod. In addition, Garrod is now able to use weapons that require the Newtype (X) skill.
*∀ Gundam gains the "Moonlight Butterfly" and "Moonlight Butterfly (MAP)" attacks, +400 HP, +40 EN, +5 Hit Rate, +200 base damage for all existing attacks.
'''Unit Acquisition (post-stage):'''
*Crowda (Lancerow)
*Gundam X and Gundam Double X gain the "G-Bits" attack.

|'''Victory Condition:''' (1) Defeat the Overdevil within 9 (Easy) / 8 (Normal) / 7 (Hard) turns; (2) Defeat Jinba; (3) Defeat Gainer B; (4) Defeat the Overdevil within 9 (Easy) / 8 (Normal) / 7 (Hard) turns.'''Victory Condition (includes hidden):''' (1) Defeat Jinba; (2) Defeat Gainer B; (3) Defeat the Overdevil within 9 (Easy) / 8 (Normal) / 7 (Hard) turns. '''Defeat Condition:''' (1) Ally battleship or Emperanza is defeated, or 10th (Easy) / 9th (Normal) / 8th (Hard) turn reached; (2) Ally battleship is defeated, or 10th (Easy) / 9th (Normal) / 8th (Hard) turn reached. '''SR Point:''' Defeat all other enemies, then defeat the Overdevil within 7 (Easy) / 6 (Normal) / 5 (Hard) turns. '''Unit Acquisition (pre-deployment intermission):'''
*Panther (Gauli)
*Panther (Sara)
'''Unit Acquisition:'''
*King Gainer (Gainer)
*Jinba (Sara)
**Inherits upgrades from Sara's Panther.
*King Gainer gains the "Overheat" attack, an improved "Overskill" ability, +200 HP, +20 EN, +200 base damage for all existing attacks.
**Overskill : Activates when Oversense Level is at least 6 and 130+ Morale: +10+x Mobility, +10+x Hit Rate (x = Oversense Level × 2), +2 Movement, Shadow(50% chance of full evasion)
*Emperanza gains the "Black Hole" attack.
*Dorbeck (Kejinan)
*Dorbeck (Enge)
*Dorbeck (Jaboli)
'''Unit Acquisition (post-stage):'''
*Dominator (Cynthia)
*Panther (Gauli)
*Panther
|-
| class="fc-route1" |'''{{Ruby|第５３話|だい５３わ}}：{{Ruby|月面|げつめん}}{{Ruby|決戦|けっせん}} Scenario 53 - Lunar Showdown'''
| class="fc-route2" |'''{{Ruby|第５３話|だい５３わ}}：{{Ruby|歪んだ|ゆがんだ}}{{Ruby|裁き|さばき}} Scenario 53 - Warped Judgement'''

|-
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleships or God Sigma is defeated. '''SR Point:''' Clear the map within 6 turns. '''Secret Requirements:'''
*Spirit of Steel #6
**After the scenario, obtain the Spirit of Steel form the Bazaar
'''Unit Acquisition:'''
*God Sigma Gravion (Sandman)
*God Sigma gains the "Trinity Wing" attack
'''Unit Acquisition (post-stage):'''
*Aquarion Alpha/Aquarion Omega/Aquarion Delta
**If secret wasn't met earlier

|'''Victory Condition:''' (1) Defeat all enemies; (2) Rescue the hostages; (3) Defeat all enemies. '''Defeat Condition:''' (1) Ally battleships or God Sigma is defeated; (2) Ally battleships, God Sigma, or the Elder Battleship is defeated; (3) Ally battleships are defeated. '''SR Point:''' Clear the map within 7 turns. '''Secret Requirements:'''
*Ending Points +1
**Trigger the rescue event by reducing Professor Kazami's Elder Battleship to below 2000 HP
*Big O Final Stage (early)
**Deploy Big O and ensure it is alive when you defeat Big Duo Inferno
*Final Dynamic Special
**Deploy Mazinger Z, Great Mazinger, Grendizer, and Getter Dragon. Kouji and Tetsuya must be in Mazinger Z and Great Mazinger respectively. Ensure they're alive when you destroy the King of Vega or Kagaku Yousaitou
'''Unit Acquisition:'''
*God Sigma Gravion (Sandman)
*God Sigma gains the "Trinity Wing" attack
*Big O gains Dorothy as a sub-pilot
*Big O gains the "Big O Final Stage" attack
*Mazinger Z, Great Mazinger, Grendizer, and Getter Dragon gain the "Final Dynamic Special" combination attack
'''Unit Acquisition (post-stage):'''
*Freeden (Sarah, Tonya, Shingo)
*Iron Gear (Cotset)
**Elche and Fatman become Walker Machine pilots
*Aquarion Alpha/Aquarion Omega/Aquarion Delta
**If secret wasn't met earlier

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第５４話|だい５４わ}}：{{Ruby|魂|たましい}}の{{Ruby|凱歌|がいか}} Scenario 54 - Triumphal Song of the Soul'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleships are defeated. '''SR Point:''' Clear the stage within 6 turns. '''Secret Requirements:'''
*Baldirosier
**If the secret was not met earlier, deploy Baldios and make sure it survives when you destroy the Spirit Gattler
'''Unit Acquisition (pre-deployment intermission):'''
*Eternal (Lacus, Waltfeld, Meylin)
'''Unit Acquisition:'''
*Baldios gains the "Baldirosier" attack
**If secret wasn't met earlier
*Baldios temporarily leaves until the end of the stage after Spirit Gattler is defeated
*God Sigma temporarily leaves until the end of the stage after Gargos is defeated
*God Sigma Gravion (Sandman) leaves after Zeravion is defeated

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第５５話|だい５５わ}}：{{Ruby|永延|えいえん}}に{{Ruby|耀け|かがやけ}}, {{Ruby|僕ら|ぼくら}}の{{Ruby|星|ほし}}よ Scenario 55 - Shine Forevermore, Our Beloved Planet'''

|-
| colspan="2" |'''Victory Condition:''' [1st half] Defeat Gouma; [2nd half] Defeat Bandock. '''Defeat Condition:''' [1st half] (1) Ally battleships, Sol Gravion, or Zambot 3 is defeated, or Gouma reaches the southern edge of the map; (2) Ally battleships, Sol Gravion, or God Sigma Gravion is defeated, or Gouma reaches the southern edge of the map; [2nd half] Ally battleships are defeated. '''SR Point:''' Defeat all Zeravire enemies, then defeat the Gouma within 5 turns. '''Secret Requirements:'''
*Ending Points +1
**Destroy Gym (retreats once Gouma falls below 50% health)
*Ending Points +1
**Destroy Shagia (retreats once Gouma falls below 50% health)
*Ending Points +1
**Destroy Olba (retreats once Gouma falls below 50% health)
'''Unit Acquisition [1st half]:'''
*God Sigma Gravion (Sandman)
*Eternal (Lacus, Waltfeld, Meyrin)
*Soleil (Diana, Milan)
*Zambot 3
'''Unit Acquisition [post-1st half]:'''
*Sol Gravion and God Sigma Gravion gain the "Choujuu En'ou Zan" combination attack
'''Unit Acquisition [2nd half]:'''
*Zambot 3
'''Unit Acquisition [post-2nd half]:'''
*SUMO Silver Type (Poe)

|- class="fc-route-h"
|'''ZEUTHとして戦う Fight as part of ZEUTH'''
|'''ザフトへ戻る Return to ZAFT'''

|-
| class="fc-route1" |'''{{Ruby|第５６話|だい５６わ}}：{{Ruby|君|きみ}}の{{Ruby|姿|すがた}}, {{Ruby|僕|ぼく}}の{{Ruby|姿|すがた}} Scenario 56 - Your Self, My Self'''
| class="fc-route2" |'''{{Ruby|第５６話|だい５６わ}}：{{Ruby|最後|さいご}}の{{Ruby|力|ちから}} Scenario 56 - The Final Power'''

|-
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleships are defeated. '''SR Point:''' Clear the map within 7 turns. '''Secret Requirements:'''
*Rey & Talia
** Have both Kira and Shinn fight Rey. Then have Shinn convince Rey, and then have Shinn destroy Rey
*Yzak #3
**Have Athrun convince Yzak
*Sarah & Reccoa #5b
**If you failed to have Katz or Kamille fight Sarah on stage 37, have Kamille convince Sarah
*Sarah & Recooa #6
**Destroy Sarah's unit. Then have Kamille convince Reccoa and leave her alive for the rest of the stage
*Biosensor
**If you failed to meet the requirement earlier, deploy Kamille in the Zeta Gundam and destroy Yazan
'''Unit Acquisition:'''
*Neo becomes Mu
*Zeta Gundam gains the "Beam Saber (Hyper)" and "Waverider Crash" attacks, and the "Biosensor" ability
**If not met earlier
*Strike Freedom Gundam temporarily leaves until the end of the stage after the Minerva is defeated
*All upgrades on Legend Gundam are refunded
**If secret is not met
*All upgrades on Minerva are refunded
**If secret is not met
'''Unit Acquisition (post-stage):'''
*Legend Gundam (Rey)
*Minerva (Talia, Arthur)
*GOUF Ignited (Yzak)
*Bolinoak Sammahn (Sarah)
*Palace Athene (Reccoa)

|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleships are defeated. '''SR Point:''' Clear the map within 8 turns. '''Secret Requirements:'''
*Ending Points +1
**Destroy Haman
*Ending Points +1
**Have Lacus convince Lunamaria while Shinn is still on the map
*Ending Points -1
**Lunamaria is destroyed
*Yzak #3
**Have Athrun convince Yzak
*Sarah & Reccoa #5b
**If you failed to have Katz or Kamille fight Sarah on stage 37, then have Kamille convince Sarah
*Sarah & Reccoa #6
**Destroy Sarah's unit. Then have Kamille convince Reccoa and leave her alive for the rest of the stage
*Biosensor
**If you failed to meet the requirement earlier, deploy Kamille in the Zeta Gundam and and destroy Yazan
*Stella
**When Stella was destroyed on stage 36, if you had at least 8 Stella Points (or 7 Points and 28+ SR Points), Stella will join after the scenario
'''Unit Acquisition:'''
*Neo becomes Mu
*Zeta Gundam gains the "Beam Saber (Hyper)" and "Waverider Crash" attacks, and the "Biosensor" ability
**If not met earlier
*Strike Freedom Gundam temporarily leaves until the end of the stage after the Minerva is defeated
*All upgrades on Legend Gundam are refunded
*All upgrades on Minerva are refunded
'''Unit Acquisition (post-stage):'''
*Destiny Gundam (Shinn)
*Impulse Gundam (Lunamaria)
*GOUF Ignited (Yzak)
*Gaia Gundam (Stella)
*Bolinoak Sammahn (Sarah)
*Palace Athene (Reccoa)

|-
| class="fc-route1" |'''{{Ruby|第５７話|だい５７わ}}：{{Ruby|終末|しゅうまつ}}の{{Ruby|光|ひかり}} Scenario 57 - Climactic Light'''
| class="fc-route2" |'''{{Ruby|第５７話|だい５７わ}}：{{Ruby|星|ほし}}に{{Ruby|願い|ねがい}}を Scenario 57 - Wish Upon a Star'''

|-
|'''Victory Condition:''' (1) Defeat Nirvash theEND; (2) Defeat Nirvash theEND, Gundam Virsago CB, Gundam Ashtaron HC, Turn X, and Cherubim Mars; (3) Defeat the Gingagou within 3 turns. '''Defeat Condition:''' (1) Ally battleships, Aquarion, or Assault-type Aquarion is defeated; (2) Ally battleships, Aquarion, or Assault-type Aquarion is defeated, or 3 turns pass. '''SR Point:''' Achieve the second victory condition within 6 turns. '''Secret Requirements:'''
*Ending Points +1
**Destroy both Otoha and Touma
'''Unit Acquisition:'''
*Sirius and Rena join as pilots of Aquarion and Assault-type Aquarion respectively
*Aquarion Angel -> Aquarion Mars
*Solar Aquarion gains the "Taiyouken" attack
'''Unit Acquisition (post-stage):'''
*(Eureka)
*Freeden (Sara, Tonya, Shingo)
*Iron Gear (Elche, Cotset, Fatman)
**Elche and Fatman return to the Iron Gear
|'''Victory Condition:''' (1) Defeat Cherubim Mars; (2) Defeat Cherubim Mars, Gundam Virsago CB, Gundam Ashtaron HC, and Turn X; (3) Defeat Cherubim Mars, Gundam Virsago CB, Gundam Ashtaron HC, Turn X, and Nirvash theEND; (4) Defeat the Gingagou. '''Defeat Condition:''' Ally battleships, Aquarion, Assault-type Aquarion, or ∀ Gundam is defeated. '''SR Point:''' Clear the map within 8 turns. '''Secret Requirements:'''
*Ending Points +1
**Destroy both Otoha and Touma
'''Unit Acquisition:'''
*Sirius and Rena join as pilots of Aquarion and Assault-type Aquarion respectively
*Aquarion Angel -> Aquarion Mars
*Solar Aquarion gains the "Taiyouken" attack
'''Unit Acquisition (post-stage):'''
*(Eureka)
*Freeden (Sara, Tonya, Shingo)
*Iron Gear (Elche, Cotset, Fatman)
**Elche and Fatman return to the Iron Gear
|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第５８話|だい５８わ}}：メモリーズ Scenario 58 - Memories'''
|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Big Fau; (2) After the enemy Big units arrive, have Big O reach the marked point within 5 turns. '''Defeat Condition:''' (1) Big O is defeated; (2) Ally battleships or Big O is defeated; (3) Ally battleships or Big O is defeated, or 5 turns pass after the enemy Big units arrive. '''SR Point:''' Defeat all enemies before having Big O reach the marked point. '''Secret Requirements:'''
*Ending Points -15
**Choose "Abandon your memories and live in Paradigm City" (メモリーを捨て、シティで生きていく)
*Chaos Caper (Ziene) & Shurouga (Asakim) #1
**Have at least 15 Ending Points, or 7 Ending Points and 46+ SR points
'''Unit Acquisition:'''
*Big O gains the "Big O Final Stage" attack
**If secret was not met earlier
|} 

==Stages 59 - END==
{| width="70%"
|- class="fc-route-h"
| colspan="2" width="50%" |'''Setsuko Route'''
| colspan="3" width="50%" |'''Land Route'''

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第５９話|だい５９わ}}：{{Ruby|黒|くろ}}の{{Ruby|世界|せかい}} Scenario 59 - World in Black'''
| colspan="3" class="fc-route4" |'''{{Ruby|第５９話|だい５９わ}}：{{Ruby|塗り潰される|ぬりつぶされる}}{{Ruby|明日|あした}} Scenario 59 - Overpainted Tomorrow'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleships are defeated. '''SR Point:''' Clear the stage within 7 turns. '''Secret Requirements:'''
*Chaos Caper (Ziene) #2
**Have any character fight Ziene, then have Setsuko fight Ziene. Then have Setsuko convince Ziene. Then destroy her with any unit
'''Unit Acquisition (post-stage):'''
*Chaos Caper (Ziene)
'''List of endings'''
*'''Bad Ending (Black History)'''
The Black History repeats itself, and the world once again enters a never-ending cycle of war.
:* '''#0''' - This requires you to have 7 or fewer Ending Points.
:* '''#1''' - When prompted on scenario 59, say you can't decide on your own (自分では決められない).
:* '''#2''' - If conditions are met, you will get the Black History Ending.
*'''Normal Ending (Unstable World)'''
The world still remains unstable, but its destruction is averted.
:* '''#0''' - This requires you to have 7 or fewer Ending Points.
:* '''#1''' - When prompted on scenario 59, say you wish for the world to stabilize (世界の安定を望む).
:* '''#2''' - If conditions are met, you will get the Unstable World Ending.
*'''Good Ending (Somewhat Stable World)'''
The world is now somewhat stable.
:* '''#0''' - This requires you to have from 8 to 17 Ending Points.
:* '''#1''' - If conditions are met, you will get the Somewhat Stable World Ending. Your choices in scenario 59 would not affect the ending.
*'''Best Ending 1 (Completely Stable World)'''
The world is now fully stabilized. This is considered as the canon history that would lead to Z2.
:* '''#0''' - This requires you to have 18 or more Ending Points.
:* '''#1''' - When prompted on scenario 59, say you wish for the world to stabilize (世界の安定を望む).
:* '''#2''' - If conditions are met, you will get the Completely Stable World Ending.
*'''Best Ending 2 (Restored World)'''
The world is restored to its state before the Break The World incident. The UCW world is split back into the various dimensions which previously merged into it. Everyone returns to their respective worlds.
:* '''#0''' - This requires you to have 18 or more Ending Points.
:* '''#1''' - When prompted on scenario 59, say you wish for everything to be restored as before (全てが元通りになるのを望む).
:* '''#2''' - If conditions are met, you will get the Restored World Ending.

| colspan="3" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleships are defeated. '''SR Point:''' Clear the stage within 7 turns. '''Secret Requirements:'''
*Chaos Caper (Ziene) & Shurouga (Asakim) #2
**Have any character fight Ziene, then have Land fight Ziene. Then have Land convince Ziene. Then destroy her with any unit
'''Unit Acquisition (post-stage):'''
*Chaos Caper (Ziene)
'''List of endings'''
*'''Bad Ending (Black History)'''
The Black History repeats itself, and the world once again enters a never-ending cycle of war.
:* '''#0''' - This requires you to have 7 or fewer Ending Points.
:* '''#1''' - When prompted on scenario 59, say you can't decide on your own (自分では決められない).
:* '''#2''' - If conditions are met, you will get the Black History Ending.
*'''Normal Ending (Unstable World)'''
The world still remains unstable, but its destruction is averted.
:* '''#0''' - This requires you to have 7 or fewer Ending Points.
:* '''#1''' - When prompted on scenario 59, say you wish for the world to stabilize (世界の安定を望む).
:* '''#2''' - If conditions are met, you will get the Unstable World Ending.
*'''Good Ending (Somewhat Stable World)'''
The world is now somewhat stable.
:* '''#0''' - This requires you to have from 8 to 17 Ending Points.
:* '''#1''' - If conditions are met, you will get the Somewhat Stable World Ending. Your choices in scenario 59 would not affect the ending.
*'''Best Ending 1 (Completely Stable World)'''
The world is now fully stabilized. This is considered as the canon history that would lead to Z2.
:* '''#0''' - This requires you to have 18 or more Ending Points.
:* '''#1''' - When prompted on scenario 59, say you wish for the world to stabilize (世界の安定を望む).
:* '''#2''' - If conditions are met, you will get the Completely Stable World Ending.
*'''Best Ending 2 (Restored World)'''
The world is restored to its state before the Break The World incident. The UCW world is split back into the various dimensions which previously merged into it. Everyone returns to their respective worlds.
:* '''#0''' - This requires you to have 18 or more Ending Points.
:* '''#1''' - When prompted on scenario 59, say you wish for everything to be restored as before (全てが元通りになるのを望む).
:* '''#2''' - If conditions are met, you will get the Restored World Ending.

|- class="fc-route-h"
| colsapn="3" width="33%" |'''Setsuko Good Ending'''
| colspan="2" width="34%" |'''Bad Ending (Not enough [[Super_Robot_Wars/Z/Secrets#EndingPoints|Ending Points]])'''
| width="33%" |'''Land Good Ending'''

|-
| class="fc-route3" |'''{{Ruby|最終話|さいしゅうわ}}：{{Ruby|私|わたし}}の{{Ruby|未来|みらい}}、{{Ruby|みんな|皆}}の{{Ruby|未来|みらい}} Final Scenario - My Future, Everyone's Future'''
| colspan="2" class="fc-prologue" |'''{{Ruby|最終話|さいしゅうわ}}：{{Ruby|果て無き|はてなき}}{{Ruby|戦い|たたかい}}の{{Ruby|環|たまき}}へ Final Scenario - Into an Endless Cycle of War'''
| class="fc-route4" |'''{{Ruby|最終話|さいしゅうわ}}：{{Ruby|俺|おれ}}の{{Ruby|未来|みらい}}、{{Ruby|お前|おまえ}}の{{Ruby|未来|みらい}} Final Scenario - My Future, Your Future'''

|-
|'''Victory Condition:''' [1st half] Defeat Lemures; [2nd half] (1) Have Nirvash spec3 reach the marked point within 5 turns; (2) Defeat Chaos Lemures. '''Defeat Condition:''' [1st half] (1) Ally battleships are defeated, or Lemures reaches the marked area; (2) Ally battleships or Nirvash spec3 is defeated, or Lemures reaches the marked area; [2nd half] (1) Ally battleships or Nirvash spec3 is defeated, or 5 turns pass; (2) Ally battleships are defeated. '''Unit Acquisition [1st half]:'''
*'''Deployed Battleships:'''
**King Beal
**Groma
**Iron Gear
**Freeden
**Soleil
*Nirvash spec2 -> Nirvash spec3
*Renton gains +5 points for Ranged and Melee stats, +10 points for all other stats.
*Nirvash theEND (Anemone)
*Federation Army Aerial Battleship (Jurgens, Dominic)
*Golem (Astham)
*Dorbeck (Kejinan)
*Dorbeck (Enge)
'''Unit Acquisition [2nd half]:'''
*'''Deployed Battleships:'''
**Argama
**Archangel
**Eternal
**Minerva
**Gekkougou
*Eureka joins as a sub-pilot for Nirvash spec3

| colspan="2" |'''Victory Condition:''' Defeat Lemures. '''Defeat Condition:''' Ally battleships are defeated.

|'''Victory Condition:''' [1st half] Defeat Lemures; [2nd half] (1) Have Nirvash spec3 reach the marked point; (2) Defeat the 3 Chaos Lemures units within the same turn. '''Defeat Condition:''' [1st half] (1) Ally battleships are defeated, or Lemures reaches the marked area; (2) Ally battleships or Nirvash spec3 is defeated, or Lemures reaches the marked area; [2nd half] (1) Ally battleships or Nirvash spec3 is defeated; (2) Ally battleships are defeated. '''Secret Requirements:'''
*Shurouga (Asakim) #3
**If Ziene is recruited, have Land destroy Asakim during the first part of the stage
'''Unit Acquisition [1st half]:'''
*'''Deployed Battleships:'''
**King Beal
**Groma
**Iron Gear
**Freeden
**Soleil
*Nirvash spec2 -> Nirvash spec3
*Renton gains +5 points for Ranged and Melee stats, +10 points for all other stats.
*Nirvash theEND (Anemone)
*Federation Army Aerial Battleship (Jurgens, Dominic)
*Golem (Astham)
*Dorbeck (Kejinan)
*Dorbeck (Enge)
*[Secret] Spearhead (Charles)
*[Secret] Spearhead (Ray)
'''Unit Acquisition [2nd half]:'''
*'''Deployed Battleships:'''
**Argama
**Archangel
**Eternal
**Minerva
**Gekkougou
*Eureka joins as a sub-pilot for Nirvash spec3
*Shurouga (Asakim)
|}

Super Robot Wars/Z/Flow Chart

2025-07-29T01:33:41Z

Paraking:

Those in Black join your team. 
Those in Orange are available for that stage, then leave. 
Those in Blue have special requirements. Check the [[../Secrets|Secrets]] page for more details. 
Those in Red previously joined, but from this point, are rendered unusable. Those lost permanently are marked so, while others rejoin later on. 
Those in Green are upgrades for units already in your party.
==Stages 01 - 09==
*'''Note 1:''' The acquisition of either protagonist is mutually exclusive for each route. If one protagonist was chosen, the other protagonist will not join the Player Team; said protagonist will still appear throughout the story, but they will be travelling separately from the Player Team.
*'''Note 2:''' If you are playing on a New Game+ mode, you will automatically be able to select between ZEUTH route and ZAFT route after stage 47 (both routes).
*'''Note 3:''' "Ally Unit battles Enemy Unit" means a squad with the ally unit set as leader battles the squad with the enemy unit inside, but the ally unit does not need to deal damage to, or even target the enemy unit. For example, if the ally unit squad uses a Centre-Formation series of single target attacks on an enemy unit squad subordinate, the condition is still met. If the battle occurs during Enemy Phase, choosing Defend or Evade will still meet the condition. Using MAP attacks, support attacks and support defenses will '''not''' meet the condition.
*'''Note 4:''' "Have Ally Unit persuade Enemy Unit" means having a squad with the ally unit set as leader move directly next to the enemy unit, and then use the Persuade ({{Ruby|説得|せっとく}}) special option on the enemy unit.

{| width="70%"
|- class="fc-route-h"
| width=50%" |'''Setsuko Route'''
| width=50%" |'''Land Route'''

|-
| class="fc-route3" |'''{{Ruby|第１話|だい１わ}}：ザ･ライトスタッフ Scenario 1 - The Right Stuff'''
| class="fc-route4" |'''{{Ruby|第１話|だい１わ}}：さすらいの{{Ruby|修理屋|しゅうりや}} Scenario 1 - The Wandering Mechanics'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) Reduce Gundam Mk-II or Rick Dias (Quattro) below 4000 HP. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Defeat either Gundam Mk-II or Rick Dias (Quattro). Both retreat below 4000 HP. '''Secret Requirements:'''
*You must be playing as Setsuko to unlock the following secrets.
**Flying Armor Crash attack for Gundam Mk-II [Early]
**Gundam Mk-II [Black]
**Dijeh
**Great Booster attack for Great Mazinger [Early]
**Gaplant (Four)
**Gaia Gundam (Stella)
**Bolinoak Sammahn (Sarah Zabiarov) & Palace Athene (Reccoa)
'''Route-Exclusive Bazaar Units:'''
*You must be playing as Setsuko to purchase the Asshimar from the Bazaar.
'''Unit Acquisition:'''
*Virgola Unit 1 (Denzel)
*Virgola Unit 2 (Toby)
*Virgola Unit 3 (Setsuko)

|'''Victory Condition:''' Defeat Promeus (Geraba). '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Defeat all enemies within turn 4 player phase. '''Secret Requirements:'''
*You must be playing as Land to unlock the following secrets.
**Plasma Gimmick & O-Thunder attacks & Powerups for Big O [Early]
**Xabungle [Unit 2]
**(Yassaba)
***(The Rushrod is not exclusive to Land route.)
**All Secret Enhancement Parts - Hero's Mark, Shadow Angel Feather, Spirit of Steel, Haro
**Spearhead (Charles) & Spearhead (Ray)'s assistance in the final battle (Normal or better ending)
**Shurouga (Asakim)'s assistance in the final battle (Normal or better ending)
'''Route-Exclusive Bazaar Units:'''
*You must be playing as Land to purchase the following units from the Bazaar.
**Government
**Mexbrute
'''Unit Acquisition:'''
*Gunleon (Land, Mel)
**Mel's ????? will be revealed and become the "SP Recovery" skill upon reaching level 50.
*Gundam X (Garrod) [base unit]
**Divider [Exchangeable parts]
**Gundam X Divider form [using Divider parts]
**(Gundam X's Satellite Cannon parts are not available, meaning Gundam X can only be in Gundam X Divider form until later in the game.)
'''Unit Acquisition (post-stage):'''
*Gatchiko (Gain)

|-
| class="fc-route3" |'''{{Ruby|第２話|だい２わ}}：{{Ruby|怒れる|おこれる}}{{Ruby|瞳|ひとみ}} Scenario 2 - Angry Eyes'''
| class="fc-route4" |'''{{Ruby|第２話|だい２わ}}：{{Ruby|旅立ち|たびだち}}の{{Ruby|日|ひ}} Scenario 2 - Day of Departure'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) ["Escape from colony" (コロニーから{{Ruby|脱出|だっしゅつ}}する) option] Defeat Sword Impulse Gundam or Zaku Warrior (Alex), or all allies reach the escape point / ["Subdue the hijacked Gundams" ({{Ruby|強奪|ごうだつ}}されたガンダムを{{Ruby|取り押さえる|とりおさえる}}) option] Defeat either Chaos Gundam, Abyss Gundam, or Gaia Gundam. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Defeat all enemies within 2 turns. '''Secret Requirements:'''
*ZEUTH Points +1
**Choose to "Subdue the hijacked Gundams".
'''Unit Acquisition ("Subdue the hijacked Gundams" option only):'''
*Sword Impulse Gundam (Shinn)
*Zaku Warrior (Alex)
'''Unit Acquisition (post-stage):'''
*Impulse Gundam (Shinn) [base unit]
**Blast Silhouette [Exchangeable parts]
**Blast Impulse Gundam form [using Blast Silhouette parts]
*Blaze Zaku Phantom (Rey)
*Gunner Zaku Warrior (Lunamaria)
*Minerva (Talia, Arthur, Meyrin)

|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Defeat Dogozzo (Adette) (retreats below 3000 HP). '''Secret Requirements:'''
*Rushrod (Yassaba) requirement:
**Gainer, Gain, Sara, Gauli, Bello, and Adette must have a combined kill count of 100 or more by the end of Scenario 18 (Gallia route).
'''Unit Acquisition:'''
*King Gainer (Gainer)
*Panther (Sara)
*Panther (Gauli)
*Panther (Bello)

|-
| class="fc-route3" |'''{{Ruby|第３話|だい３わ}}：{{Ruby|二つ|ふたつ}}の{{Ruby|世界|せかい}} Scenario 3 - Two Worlds'''
| class="fc-route4" |'''{{Ruby|第３話|だい３わ}}：{{Ruby|掟破り|おきてやぶり}}の{{Ruby|助っ人達|すけっとたち}} Scenario 3 - Lawbreaking Helpers'''

|-
|'''Victory Condition:''' (1) Defeat the Girty Lue or Exus; (2) Reduce the Alexandria below 10000 HP.'''Victory Condition (includes hidden):''' (1) Defeat the Girty Lue or Exus or 5th turn is reached; (2) Reduce the Alexandria below 10000 HP. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship, or any of the Virgola units is defeated. '''SR Point:''' Defeat the Girty Lue within 4 turns. Alternatively, defeat Chaos Gundam, Abyss Gundam, and Gaia Gundam, then defeat Exus within 4 turns. '''Secret Requirements:'''
*Gaia Gundam (Stella) Points +1
**Defeat Gaia Gundam (Stella).
*Gundam Mk-II [Black] (1/1):
**Do not defeat Gundam Mk-II (Emma). If met, Amuro will join with the black Gundam Mk-II later in the game. See Pacific Division route stage 18 and Gallia route stage 19 for further details. If not met, Amuro will join with a red Rick Dias [Unit 2].
*Dijeh requirement:
**Kamille, Quattro, Bright, Emma, Reccoa, Apolly, Roberto, Amuro, and Katz must have an '''average''' level of 25 or more by the end of Scenario 25.
'''Unit Acquisition:'''
*Impulse Gundam gains two more forms via exchangeable parts:
**Force Silhouette [Exchangeable parts]
**Force Impulse Gundam form [using Force Silhouette parts]
**Sword Silhouette [Exchangeable parts]
**Sword Impulse Gundam form [using Sword Silhouette parts]
*Impulse Gundam can use Tactical Reload (requires Minerva to be on the map).
*Gundam Mk-II (Kamille)
*Rick Dias [Red] (Quattro)
*Rick Dias (Apolly)
*Rick Dias (Roberto)
*Argama (Bright, Torres, Saegusa)
(The above units are temporarily ally NPCs for 1 turn) 
'''Unit Acquisition (post-stage):'''
*All units except for the Glory Star leave. Glory Star refers to:
**Virgola Unit 3 (Setsuko)
**Virgola Unit 1 (Denzel)
**Virgola Unit 2 (Toby))
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Rushrod.'''Victory Condition (includes hidden):''' (1) Defeat the Buffalo or 4th turn is reached; (2) Defeat Rushrod. '''Defeat Condition:''' (1) Gatchiko or Panther (Sara) is defeated; (2) King Gainer or Panther (Sara) is defeated; (3) The Iron Gear is defeated. '''SR Point:''' Defeat the Buffalo by turn 3 player phase. '''Unit Acquisition:'''
*Walker Gallia (Jiron, Chill)
*Xabungle (Rag)
*Trad 11 (Blume)
*Trad 11 (Dike)
*Iron Gear (LS)/Iron Gear (WM) (Elche, Cotset, Fatman)
*King Gainer gains the "Overskill Attack" attack and the "Overskill" ability.
'''Unit Acquisition (post-stage):'''
*Custom squad formations are now available.

|-
| class="fc-route3" |'''{{Ruby|第４話|だい４わ}}：{{Ruby|異星人|いせいじん}}{{Ruby|襲来|しゅうらい}} Scenario 4 - Alien Invasion'''
| class="fc-route4" |'''{{Ruby|第４話|だい４わ}}：それぞれの{{Ruby|旅|たび}},それぞれの{{Ruby|事情|じじょう}} Scenario 4 - Respective Journeys, Respective Circumstances'''

|-
|'''Victory Condition:''' (1) Defeat the King of Vega; (2) Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Reduce the King of Vega below 10000 HP or 4th turn is reached; (2) Defeat all enemies. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Reduce the King of Vega below 10000 HP within 3 turns. '''Unit Acquisition:'''
*Grendizer/Spazer (Duke)
*Double Spazer (Kouji)
*Drill Spazer (Maria)
*Marine Spazer (Hikaru)
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Rushrod.'''Victory Condition (includes hidden):''' (1) Battle Galapagos (Horla) or defeat 5 or more enemy squads or 3rd turn is reached; (2) Defeat Rushrod. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) The Iron Gear is defeated. '''SR Point:''' Defeat all other enemies, then defeat Rushrod by turn 5 player phase. '''Unit Acquisition:'''
*TRI attacks (Tri-Charge) become available for your squad units. They require the unit to be the leader of a TRI formation squad, and there are 3 units in the squad.

|-
| class="fc-route3" |'''{{Ruby|第５話|だい５わ}}{{Ruby|目覚め|めざめ}}の{{Ruby|日|ひ}} Scenario 5 - Day of Awakening'''
| class="fc-route4" |'''{{Ruby|第５話|だい５わ}}：ムーン・ライダーズ Scenario 5 - Moon Riders'''

|-
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' After enemy reinforcements arrive, defeat all enemies within 3 turns. '''Secret Requirements:'''
*Aki Point requirement:
**By the end of Scenario 6, Kappei's kill count must be at least 5.
'''Unit Acquisition:'''
*Zambo Ace/Zambird (Kappei)
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship is defeated. '''SR Point:''' Clear the map within 3 turns. '''Unit Acquisition:'''
*Nirvash (Eureka)
*Terminus 909 (Holland)
*Terminus 606 (Matthieu, Stoner)
*Terminus 808 (Hilda)
*Gekkougou (Talho, Happ, Kengou)

|-
| class="fc-route3" |'''{{Ruby|第６話|だい６わ}}：{{Ruby|超重神|ちょうじゅうしん}}{{Ruby|降臨|こうりん}} Scenario 6 - Descend, Super Gravity God'''
| class="fc-route4" |'''{{Ruby|第６話|だい６わ}}：{{Ruby|祭り|まつり}}の{{Ruby|夜|よる}}に Scenario 6 - The Night of the Festival'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Dicreel within 3 turns after God Gravion appears. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Any ally unit is defeated, or 4 turns pass after God Gravion appears. '''SR Point:''' Defeat all enemies within 2 turns. '''Secret Requirements:'''
*Aki Points +1
**Kappei's kill count must be at least 5 by the end of this stage.
'''Unit Acquisition:'''
*Gran Kaiser (Touga)
*Gran Kaiser can transform into God Gravion (Touga, Eiji, Runa, Mizuki, Eina, ???)
*TRI attacks (Tri-Charge) become available for your squad units. They require the unit to be the leader of a TRI formation squad, and there are 3 units in the squad.

|'''Victory Condition:''' Defeat Wodom (Pou). '''Defeat Condition:''' The Iron Gear or ∀ Gundam is defeated. '''SR Point:''' Defeat all other enemies, then defeat Wodom (Pou) by turn 3 player phase. '''Unit Acquisition:'''
*∀ Gundam (Loran) aka Turn A Gundam

|-
| class="fc-route3" |'''{{Ruby|第７話|だい７わ}}：{{Ruby|月光|げっこう}}、{{Ruby|怒り|いかり}}に{{Ruby|染めて|そめて}} Scenario 7 - Moonlight, Tainted by Rage'''
| class="fc-route4" |'''{{Ruby|第７話|だい７わ}}：{{Ruby|月|つき}}の{{Ruby|女神|めがみ}} Scenario 7 - Goddess of the Moon'''

|-
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Defeat 2 enemies within 2 turns.
'''Unit Acquisition:'''
*Kuuraiou (Toshiya)
*Zambo Ace/Zambird (Kappei) becomes Zambot 3 (Kappei, Uchuuta, Keiko).
*God Gravion sub-pilot ??? is revealed as Leele.
*Gran Kaiser gains the "Gran Knights Attack" attack.
*God Gravion gains the "Gravity Crescent" attack.
'''Unit Acquisition (post-stage):'''
*King Beal (Heizaemon, Gengorou, Ichitarou)
*Gundam Mk-II (Kamille)
*Rick Dias [Red] (Quattro)
*Rick Dias (Apolly)
*Rick Dias (Roberto)
*Argama (Bright, Torres, Saegusa)
*Nemo (Emma)
*Nemo (Reccoa)
*Force/Sword/Blast Impulse Gundam (Shinn)
*Blaze Zaku Phantom (Rey)
*Gunner Zaku Warrior (Lunamaria)
*Minerva (Talia, Arthur, Meyrin)

|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat the Almaiya.'''Victory Condition (includes hidden):''' (1) Battle Gundam Virsago CB or Gundam Ashtaron HC, or defeat 2 or more enemy squads, or 3rd turn is reached; (2) Battle Gundam Virsago CB or Gundam Ashtaron HC, or defeat 3 or more enemy squads in total, or the next turn is reached; (3) Defeat the Almaiya. '''Defeat Condition:''' (1) ∀ Gundam is defeated; (2) The Iron Gear or ∀ Gundam is defeated. '''SR Point:''' Defeat Gundam Virsago CB, Gundam Ashtaron HC, and SUMO Gold Type within 6 turns. '''Secret Requirements:'''
*Tiffa & G-Bits Points +1
**Defeat Jenice Kai Enil Custom (Enil).
*Tiffa & G-Bits Points +1
**Defeat either Gundam Virsago CB (Shagia) or Gundam Ashtaron HC (Olba).
*Spirit of Steel (1/6) + (2/6)
**Defeat either Gundam Virsago CB (Shagia) or Gundam Ashtaron HC (Olba).
**Buy the Silver Accessory (シルバーアクセ) from the Bazaar.
'''Unit Acquisition:'''
*Kapool (Sochie)
*Kapool (Miashei)
*∀ Gundam gains the "Gundam Hammer", "Beam Saber", and "Beam Rifle (Rapid Fire)" attacks, +20 EN, +5 Mobility, and Sword Equipment + Shield Equipment characteristics.

|-
| class="fc-route3" |'''{{Ruby|第８話|だい８わ}}：{{Ruby|世界|せかい}}の{{Ruby|終わる|おわる}}{{Ruby|時|とき}} Scenario 8 - The End of the World'''
| class="fc-route4" |'''{{Ruby|第８話|だい８わ}}：{{Ruby|天翅|てんし}}の{{Ruby|記憶|きおく}} Scenario 8 - Angel Memories'''

|-
|'''Victory Condition:''' Defeat all GINN High Maneuver Type IIs.'''Victory Condition (includes hidden):''' (1) Defeat all GINN High Maneuver Type IIs. (2) Defeat GINN High Maneuver Type II (Sato). '''Defeat Condition:''' Ally battleship, or Gundam Mk-II, or Impulse Gundam is defeated; any GINN High Manuver Type II reaches the marked line. '''SR Point:''' Clear the map within 6 turns. '''Secret Requirements:'''
*ZEUTH Points +1
**Have Alex's Zaku Warrior defeat Sato's GINN High Maneuver Type II.
*Flying Armor Crash attack for Gundam Mk-II [Early] (1/1)
**Defeat Galbaldy Beta (Lila). Kamille's Gundam Mk-II will use Flying Armor Crash to defeat Lila's Galbaldy Beta again in an event. If not met, the attack will be gained after the stage.
*Aki Points +5
**Defeat the Bandock (Butcher).
*Dijeh requirement:
**Kamille, Quattro, Bright, Emma, Reccoa, Apolly, Roberto, Amuro, and Katz must have an '''average''' level of 25 or more by the end of Scenario 25.
'''Unit Acquisition:'''
*Zaku Warrior (Alex)
*Gundam Mk-II gains the "Flying Armor Crash" attack
*Minerva (Talia) cannot move
'''Unit Acquisition (post-stage):'''
*Gundam Mk-II gains the "Flying Armor Crash" attack (if not unlocked during the stage)
*All units except for the Glory Star leave. Glory Star refers to:
**Virgola Unit 3 (Setsuko)
**Virgola Unit 1 (Denzel)
**Virgola Unit 2 (Toby))
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) The Iron Gear or Aquarion is defeated. '''SR Point:''' Defeat all enemies within 3 turns. '''Secret Requirements:'''
*Hero's Mark (1/5) + (2/5)
**Sortie Jiron as the main pilot in any unit. Have Jiron's unit and Apollo's Solar Aquarion defeat at least one enemy each.
**Buy the Smoked Lizard (トカゲのくんせい) from the Bazaar.
'''Unit Acquisition:'''
*Aquarion Luna (Reika, Sirius, Glenn) (later, the pilots are re-organized, and the unit changes to Solar Aquarion)
*Solar Aquarion/Aquarion Mars/Aquarion Luna (Apollo, Sirius, Sylvia) aka Aquarion
*Borjarnon (Gavane)
*SUMO Gold Type (Harry)
*Iron Gear (Elchi) temporarily cannot move
|-
| class="fc-route3" |'''{{Ruby|第９話|だい９わ}}：{{Ruby|時空|じくう}}{{Ruby|破壊|はかい}} Scenario 9 - Dimension Crash'''
| class="fc-route4" |'''{{Ruby|第９話|だい９わ}}：{{Ruby|世界|せかい}}の{{Ruby|終わり|おわり}}の{{Ruby|日|ひ}} Scenario 9 - The Day the World Ends'''

|-
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Clear the map within 3 turns. '''Unit Acquisition:'''
*Bronco II (Kei)
*Bronco II (Olson)
*Denzel moves to Virgola Unit 3, Setsuko moves to Virgola Unit 1
*Virgola Unit 3 (Denzel)
**All upgrades on Virgola Unit 3 are refunded
**All PP obtained by Denzel is transferred to Setsuko
'''Unit Acquisition (post-stage):'''
*All units leave

|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' The Iron Gear or Aquarion is defeated. '''SR Point:''' Clear the map within 4 turns. '''Unit Acquisition:'''
*Solar Aquarion (Apollo) (all pilot sets) gains the "Mugen Punch" attack.
'''Unit Acquisition (post-stage):'''
*All units leave
|}

==Stages 10 - 15==
{| width="70%"
|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第１０話|だい１０わ}}：ブレイク・ザ・ワールド Scenario 10 - Break the World'''
|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Defeat all enemies or 4th turn is reached; (2) Defeat all enemies. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' Defeat all enemies within 3 turns. '''Unit Acquisition:'''
*Bronco II (Kei)
*M.Lover Maaie (Maaie)
*M.Lover Lieea (Lieea)
*Groma (Shaiya, Mimsy)
(The above units are upgradable in the post-stage intermission)
<hr>
*Windam (Neo)
*Chaos Gundam (Sting)
*Abyss Gundam (Auel)
*Gaia Gundam (Stella)

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第１１話|だい１１わ}}：パラダイム・シフト Scenario 11 - Paradigm Shift'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Beck Victory Deluxe; (2) Defeat Mummy. '''Defeat Condition:''' Any ally unit is defeated. '''SR Point:''' After enemy reinforcements arrive, defeat all other enemies before defeating Mummy within 3 turns. '''Unit Acquisition:'''
*Big O (Roger) (upgradable in post-stage intermission)
*Protagonist's unit: Either Virgola Unit 1 (Setsuko) or Gunleon (Land)

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第１２話|だい１２わ}}：ブルースカイ・フィッシュ Scenario 12 - Blue Sky Fish'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Defeat the Federation Army Aerial Battleship, or 5th turn is reached; (2) After Titans arrive, defeat all enemies, or 3 turns pass. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship or Nirvash is defeated. '''SR Point:''' After the Messala arrives, defeat it within 2 turns. '''Secret Requirements:'''
*Dijeh requirement:
**Kamille, Quattro, Bright, Emma, Reccoa, Apolly, Roberto, Amuro, and Katz must have an '''average''' level of 25 or more by the end of Scenario 25.
'''Unit Acquisition:'''
*Nirvash (Eureka, Renton [joins mid-stage])
*Terminus 909 (Holland)
*Terminus 808 (Hilda)
*Terminus 606 (Matthieu, Stoner)
*Gekkougou (Talho, Happ, Kengou)
(The above units are upgradable in the post-stage intermission)
<hr>
*Gundam Mk-II (Kamille)
*Rick Dias [Red] (Emma)
*Methuss/Methuss (MA) (Reccoa)
*Hyaku Shiki (Quattro)
*Rick Dias (Apolly)
*Rick Dias (Roberto)
*Argama (Bright, Torres, Saegusa)
*Impulse Gundam (Shinn) [base unit]
**Force Silhouette [Exchangeable parts]
**Force Impulse Gundam form [using Force Silhouette parts]
**Sword Silhouette [Exchangeable parts]
**Sword Impulse Gundam form [using Sword Silhouette parts]
**Blast Silhouette [Exchangeable parts]
**Blast Impulse Gundam form [using Blast Silhouette parts]
**Impulse Gundam can use Tactical Reload (requires Minerva to be on the map).
*Blaze Zaku Phantom (Rey)
*Gunner Zaku Warrior (Lunamaria)
*Minerva (Talia, Arthur, Meyrin)
*Virgola Unit 1 gains the "Jack Carver" attack (Playing as Setsuko only)
'''Unit Acquisition (post-stage):'''
*Nemo (No Pilot) x2
|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第１３話|だい１３わ}}：{{Ruby|立ち上がれ|たちあがれ}}、{{Ruby|宇宙|うちゅう}}の{{Ruby|戦士|せんし}}！ Scenario 13 - Stand Tall, Warrior of Space!'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' King Beal, or Kuuraiou/God Sigma is defeated. '''SR Point:''' Clear the map within 4 turns. '''Secret Requirements:'''
*TFO [Early] (1/3) + (2/3)
**Have Kouji's Double Spazer get hit (receive at least 10 damage) at least once.
**Buy the Fragment of Chougoukin New Z ({{Ruby|超合金|ちょうごうきん}}NZのかけら) from the Bazaar.
*Enhancement Parts Duplication Glitch
**After the stage, equip the protagonist's unit with enhancement parts.
'''Unit Acquisition:'''
*Double Spazer (Kouji)
*Drill Spazer (Maria)
*Zambot 3 (Kappei, Uchuuta, Keiko)
*King Beal (Heizaemon, Gengorou, Ichitarou)
*Gran Kaiser/God Gravion (Touga, [God Gravion only] Eiji, Runa, Mizuki, Leele, Eina)
*Kuuraiou (Toshiya)
*Kuuraiou (Toshiya) becomes God Sigma (Toshiya, Julie, Kiraken).
*Units from the last stage are unavailable for this stage except for the protagonist's unit.
'''Unit Acquisition (post-stage):'''
*Units from the last stage are unavailable for the post-stage intermission except for the protagonist's unit.
|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第１４話|だい１４わ}}：{{Ruby|集う|つどう}}{{Ruby|異邦人|いほうじん}}たち Scenario 14 - The Gathering Strangers'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Wodom (Poe) and Eagail (Corin); (3) Defeat Wodom (Poe), Eagail (Corin), and either Gundam Virsago CB or Gundam Ashtaron HC.'''Victory Condition (includes hidden):''' (1) Defeat 4 enemy platoons, or defeat any named enemy unit (Jenice Kai Enil Custom, Wodom (Poe), or the protagonist's unit), or 3rd turn is reached; (2) After Corin returns, battle Wodom (Poe) or Eagail (Corin), or the next turn is reached; (3) Defeat Wodom (Poe), Eagail (Corin), and either Gundam Virsago CB or Gundam Ashtaron HC. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship or ∀ Gundam is defeated. '''SR Point:''' Clear the map by turn 6 player phase. '''Secret Requirements:'''
*Enhancement Parts Duplication Glitch (1/1)
**Defeat the protagonist's unit within 2 turns, and you will obtain one additional copy for each enhancement part equipped. This is much easier to do on Setsuko route than on Land route.
*Tiffa & G-Bits Points +1 (Setsuko Route starts here)
**Have Garrod persuade Enil.
*Tiffa & G-Bits Points +1
**Do not defeat Jenice Kai Enil Custom (Enil).
*Rushrod (Yassaba) requirement: (Setsuko Route starts here)
**Gainer, Gain, Sara, Gauli, Bello, and Adette must have a combined kill count of 100 or more by the end of Scenario 18 (Gallia route).
'''Unit Acquisition:'''
*Freeden (Jamil, Sarah, Tonya, Shingo)
*Gundam Airmaster Burst (Witz)
*Gundam Leopard Destroy (Roybea)
*Bertigo (Caris)
*Gundam X (Garrod) [base unit]
**Divider [Exchangeable parts]
**Gundam X Divider form [using Divider parts]
**(Gundam X's Satellite Cannon parts are not available, meaning Gundam X can only be in Gundam X Divider form until later in the game.)
*King Gainer (Gainer)
*Gatchiko (Gain)
*Panther (Gauli)
*Panther (Sara)
*Panther (Bello)
*Walker Gallia (Jiron, Chill)
*Xabungle (Rag, Blume)
*Trad 11 (Dike)
*Iron Gear (LS)/Iron Gear (WM) (Elche, Cotset, Fatman)
*∀ Gundam (Loran) aka Turn A Gundam
*Kapool (Sochie)
*Kapool (Miashei)
*Borjarnon (Gavane)
*Borjarnon (Joseph)
*Units from the last two stages are unavailable for this stage except for the protagonist's unit.
*The protagonist's unit is temporarily forced to join the enemy team.
'''Unit Acquisition (post-stage):'''
*Trad 11 (No pilot)
*Units from the last two stages are unavailable for the post-stage intermission except for the protagonist's unit.
|-
| colspan="2" class="fc-std-sc" style="background:#9ACD32"| '''{{Ruby|第１５話|だい１５わ}}：{{Ruby|見えない|みえない}}{{Ruby|明日|あした}}へ Scenario 15 - To an Unseen Tomorrow'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Ishkick Commander (Henry); (2) Defeat Windam (Neo); (3) Defeat the Bandock or the Elder Battleship; (4) [Land route] Defeat all enemies / [Setsuko route] Defeat all Cherubim Soldiers & Mythology Beasts.'''Victory Condition (includes hidden):''' (1) Defeat Ishkick Commander (Henry); (2) After the Phantom Pain arrives, defeat Windam (Neo), or 3 turns pass; (3) After the Alien Invader forces arrive, defeat the Bandock or the Elder Battleship, or 3 turns pass; (4) [Land route] Defeat all enemies / [Setsuko route] Defeat all Cherubim Soldiers & Mythology Beasts. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship or protagonist's unit is defeated; (3) Ally battleship, or protagonist's unit, or Aquarion is defeated; (4) Ally battleship, or protagonist's unit, or Aquarion, or Shurouga [Land route] / Virgola Unit 2 [Setsuko route] is defeated. '''SR Point:''' Clear the map within 9 turns. '''Secret Requirements:'''
*ZEUTH Points
**To obtain an additional ZEUTH Point, take the Pacific Route.
*Gaia Gundam (Stella) Points +1
**Have Shinn's Impulse Gundam battle Stella's Gaia Gundam.
*Gaia Gundam (Stella) Points +1
**Defeat the Extended trio: Chaos Gundam (Sting), Abyss Gundam (Aule), and Gaia Gundam (Stella).
*Mega Bazooka Launcher attack for Hyaku Shiki [Early] (1/4) + (2/4)
**Have Quattro's Hyaku Shiki defeat at least 3 enemies during this stage.
**Take the Pacific route.
*Aki Points +1 (Land route starts here)
**Have Kappei's Zambot 3 battle Butcher's Bandock.
*Aki Points +1
**Defeat the Bandock (Butcher).
*Aki Points
**To obtain an additional Aki Point, take the Gallia Route.
*TFO [Early] (3/3)
**Purchase the Inertia Control Engineering Manual ({{Ruby|慣性制御工学|かんせいせいぎょこうがく}}マニュアル) from the Bazaar. The two items will form the TFO. If the conditions are not met, the TFO will be obtained during stage 24.
*Rushrod (Yassaba) (1/4)
**Take the Gallia Route.
*Haro (1/6)
**Take the Gallia Route.
*Spirit of Steel (3/6)
**Take the Gallia Route.
'''Unit Acquisition:'''
*Orguss/Orguss Flyer (Kei)
**Inherits upgrades from Bronco II
*M.Lover Maaie (Maaie)
*M.Lover Lieea (Lieea)
*Mome joins as a sub-pilot of the Groma.
*Groma (Shaiya, Mimsy, Mome)
*Terminus 909 (Holland)
*Terminus 606 (Matthieu, Stoner)
*Nirvash (Eureka, Renton)
*Gekkougou (Talho, Happ, Kengou)
*Solar Aquarion (Apollo, Pierre, Sylvia)
*Solar Aquarion (Apollo) (pilot sets B & D) gains the "Fire Fist" attack.
*Aquarion Mars (Pierre) (pilot sets B & D) gains the "Flaming Kick" attack.
*Mel rejoins as a sub-pilot of the Gunleon (Playing as Land only)
*Virgola Unit 2 (Toby) (Playing as Setsuko only)
*Shurouga (Asakim) (Playing as Land only)
*Some support units are not available for this stage.
**Zeta Gundam: Rick Dias (Apolly), Rick Dias (Roberto), Methuss (Reccoa), Nemo x2
**∀ Gundam: Borjarnon (Gavane), Borjarnon (Joseph)
**Xabungle: Trad 11 [2nd]
**King Overman Gainer: Panther (Gauli), Panther (Bello)
'''Unit Acquisition (post-stage):'''
*TFO (No pilot)
'''Route-Exclusive Bazaar Units:'''
*To purchase the Dugger and the Caprico (first opportunity) from the Bazaar, take the Gallia route.
|}

==Stages 16 - 20==
{| width="70%"
|- class="fc-route-h"
|'''太平洋部隊を希望する Volunteer for the Pacific Division''' Gravion Gundam X God Sigma Gundam SEED Destiny Zeta Gundam
|'''ガリア部隊を希望する Volunteer for the Galia Division''' Xabungle Orguss King Gainer Zambot 3 Grendizer Turn A Gundam

|-
| class="fc-route1" |'''{{Ruby|第１６話|だい１６わ}}：{{Ruby|交差|こうさ}}する{{Ruby|決意|けつい}} Scenario 16 - Crossing Resolves'''
| class="fc-route2" |'''{{Ruby|第１６話|だい１６わ}}：{{Ruby|特異点|とくいてん}} Scenario 16 - Singularity Point'''

|-
|'''Victory Condition:''' (1) Reduce the Gekkougou to 10% HP; (2) Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Reduce the Gekkougou or Nirvash to 10% HP, or 3rd turn is reached; (2) Defeat all enemies. '''Defeat Condition:''' (1) Ally battleship, or any enemy unit is defeated; (2) Ally battleship is defeated. '''SR Point:''' After enemy reinforcements arrive, defeat all enemies within 4 turns. '''Secret Requirements:'''
*Mega Bazooka Launcher attack for Hyaku Shiki [Early] (3/4)
**'''Before the stage''', purchase the High-Capacity Energy Pack ({{Ruby|大容量|だいようりょう}}エネルギーパック) from the Bazaar.
*ZEUTH Points +1 (Land - Pacific route starts here)
**Defeat Freedom Gundam (Kira) (ally NPC, so only MAP attacks work)
'''Unit Acquisition:'''
*After the route split choice, custom squad formations become available. (Setsuko route)
*Nirvash (Eureka, Renton)
*Terminus 909 (Holland)
*Terminus 808 (Hilda)
*Terminus 606 (Matthieu, Stoner)
*Gekkougou (Talho, Happ, Kengou)
*Freedom Gundam (Kira) (ally NPC)
*Freeden is unavailable for this stage.
*The Eureka Seven units are temporarily forced to join the enemy team.
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Ishkick Commander (Robert).'''Victory Condition (includes hidden):''' (1) Defeat all enemies or 4th turn is reached; (2) Defeat Ishkick Commander (Robert). '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat all enemies within 3 turns. '''Secret Requirements:'''
*Haro (2/6)
**Purchase the First Issue of Ray-Out (ray=out{{Ruby|創刊号|そうかんごう}}) from the Bazaar
'''Unit Acquisition:'''
*After the route split choice, custom squad formations become available. (Setsuko route)
'''Unit Acquisition (post-stage):'''
*[Bazaar unit] Dugger
*[Bazaar unit - Gallia route] Caprico

|-
| class="fc-route1" |'''{{Ruby|第１７話|だい１７わ}}：{{Ruby|青い|あおい}}{{Ruby|放浪者|ほうろうしゃ}} Scenario 17 - Blue Drifter'''
| class="fc-route2" |'''{{Ruby|第１７話|だい１７わ}}：{{Ruby|地獄|じごく}}の{{Ruby|エキデン|駅伝}} Scenario 17 - The Relay from Hell'''

|-
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship, Grendizer, or Marine Spazer is defeated. '''SR Point:''' Clear the map by turn 6 player phase. '''Unit Acquisition:'''
*Baldios (Marin, Oliver, Raita)
*Grendizer/Spazer (Duke)
*Marine Spazer (Hikaru)
*Freeden cannot move
*Zeta Gundam and Gundam SEED Destiny units are unavailable for this stage
'''Unit Acquisition (post-stage):'''
*Nirvash (Eureka, Renton)
*Terminus 909 (Holland)
*Terminus 808 (Hilda)
*Terminus 606 (Matthieu, Stoner)
*Gekkougou (Talho, Happ, Kengou)
|'''Victory Condition:''' Defeat Golem. '''Defeat Condition:''' (1) Gatchiko is defeated; (2) Ally battleship is defeated. '''SR Point:''' After Big O arrives, defeat Golem within 4 turns. '''Relay Race Winner:'''
*In this scenario, whichever team gets the most kills will be the winner of the relay race, and gain 50 additional PP. If the result is a tie, no team will receive any additional PP.
**'''Sara Team:''' Sara, Gainer, Bello, Loran, Sochie, Miashei, Gavanne, Kouji, Maria, Kappei, Rag, Mimsy
**'''Adette Team:''' Adette, Gain, Gauli, Kei, Maaie, Lieea, Jiron, Blume, Dike, Uchuuta, Keiko, Ichitarou
**The protagonist can choose '''「サラチームに参加」''' to join Sara Team, or '''「アデットチームに参加」''' to join Adette Team. Joseph will then join the other team.
**Kills by units with sub-pilots who belong to either team still count towards the team effort. For example, Zambot 3 has Kappei in Sara Team, while Uchuuta and Keiko are in Adette Team, so each enemy defeated by Zambot 3 will simultaneously add 1 point to Sara Team and 2 points to Adette Team.
'''Secret Requirements:'''
*Rushrod (Yassaba) requirement:
**Gainer, Gain, Sara, Gauli, Bello, and Adette must have a combined kill count of 100 or more by the end of Scenario 18.
'''Unit Acquisition:'''
*Big O (Roger)
*Dorbeck (Adette)

|-
| class="fc-route1" |'''{{Ruby|第１８話|だい１８わ}}：{{Ruby|血|ち}}に{{Ruby|染まる|そまる}}{{Ruby|瞳|ひとみ}} Scenario 18 - Bloodstained Eyes'''
| class="fc-route2" |'''{{Ruby|第１８話|だい１８わ}}：さらば、{{Ruby|我が|わが}}{{Ruby|友|とも}}よ Scenario 18 - Farewell, My Friend'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Zamza-Zah; (3) Defeat the Battle Airship or the Elder Battleship.'''Victory Condition (includes hidden):''' (1) Battle Asshimar or the Garuda-class, or 3rd turn is reached; (2) Defeat Zamza-Zah; (3) Defeat the Battle Airship or the Elder Battleship. '''Defeat Condition:''' (1) Ally battleship or Impulse Gundam is defeated; (2) Ally battleship, Impulse Gundam, or Amuro's unit is defeated; (3) Ally battleship is defeated. '''SR Point:''' Clear the map within 7 turns. '''Secret Requirements:'''
*Gundam Mk-II [Black]
**If the condition is met, Amuro will join with a black Gundam Mk-II. If not, Amuro will join with a red Rick Dias [2nd unit].
*Dijeh requirement:
**Kamille, Quattro, Bright, Emma, Reccoa, Apolly, Roberto, Amuro, and Katz must have an '''average''' level of 25 or more by the end of Scenario 25.
**Amuro and Katz must have an '''average''' kill count of 25 or more by the end of Scenario 25.
'''Unit Acquisition:'''
*Rick Dias [Red, 2nd] or Gundam Mk-II [Black] (Amuro)
*Shinn's ????? is unlocked, and is revealed to be the "SEED" ability
*Shinn's Impulse Gundam is forced to Tactical Reload into Sword Impulse Gundam form after an event.
*Freeden is unavailable for this stage
'''Unit Acquisition (post-stage):'''
*(Katz)
*Nirvash (Eureka, Renton)
*Terminus 909 (Holland)
*Terminus 808 (Hilda)
*Terminus 606 (Matthieu, Stoner)
*Gekkougou (Talho, Happ, Kengou)
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) Zambo Ace is defeated; (2) Ally battleship or Zambo Ace is defeated; (3) Ally battleship or Zambo Ace is defeated, or enemy reaches the marked line; (4) Ally battleship or Aquarion is defeated, or enemy reaches the marked line. '''SR Point:''' Clear the map within 7 turns. '''Secret Requirements:'''
*Aki Points +1
**Have Zambo Ace/Zambird (Kappei) defeat at least two enemies before reinforcements arrive.
***(This is extremely luck-based with an unupgraded Zambo Ace - at least upgrading Zambot 3's weapons and armor beforehand will make this a lot easier.)
*Rushrod (Yassaba) (2/4) + (3/4)
**By the end of the map, Gainer, Gain, Gauli, Sara, Bello, and Adette must have a combined kill count of at least 100.
**Purchase the Scrap (OM) (スクラップ(OM)) from the Bazaar.
'''Unit Acquisition:'''
*Aquarion Luna (Tsugumi, Jun, Apollo)
*Aquarion Luna (Tsugumi) (pilot set E) gains the "Gyaku Nensha Bakuha" attack.
*Aquarion Mars (Jun) (pilot set E) gains the "Nensha Ichigan" attack.
*Zambo Ace/Zambird (Kappei) (later becomes Zambot 3 (Kappei, Uchuuta, Keiko) again)

|-
| class="fc-route1" |'''{{Ruby|第１９話|だい１９わ}}：{{Ruby|よみがえる|蘇る}}{{Ruby|翼|つばさ}} Scenario 19 - Resurrected Wings'''
| class="fc-route2" |'''{{Ruby|第１９話|だい１９わ}}：{{Ruby|建国|けんこく}}のブリザード Scenario 19 - Nation-Founding Blizzard'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat all enemies, or the Archangel reaches the marked line. '''Defeat Condition:''' (1) Freedom Gundam is defeated; (2) Any ally unit is defeated; (3) Ally battleship, or Freedom Gundam, or Murasame (Waltfeld) is defeated. '''SR Point:''' Defeat all enemies within 3 turns. '''Secret Requirements:'''
*Mega Bazooka Launcher attack for Hyaku Shiki [Early] (4/4)
**Purchase the Mega Condenser (メガコンデンサー) from the Bazaar. The two items will combine to form the Mega Bazooka Launcher for Hyaku Shiki. If the conditions are not met, the attack will be obtained after stage 33 (Setsuko - Gibraltar Base route).
'''Unit Acquisition:'''
*Freedom Gundam (Kira)
*Murasame (Waltfeld)
*Archangel (Murrue, Neumann, Chandra)
*Only the protagonist's unit, Virgola Unit 2 (Toby) (playing as Setsuko only), Gundam X (except the Freeden) and Eureka Seven units are available for this stage.
*Battleships cannot be boarded, nor use the Recall ability for this stage.
'''Unit Acquisition (post-stage):'''
*Alex changes name to Athrun.
*Saviour Gundam (Athrun)
*Hyaku Shiki gains the "Mega Bazooka Launcher" attack.

|'''Victory Condition:''' (1) Defeat Wodom (Poe) and SUMO Gold Type; (2) Defeat Jinba and Beck Victory Deluxe.'''Victory Condition (includes hidden):''' (1) Defeat Wodom (Poe) and SUMO Gold Type; alternatively but does not achieve the SR point, 5th turn reached; (2) Defeat Jinba and Beck Victory Deluxe. '''Defeat Condition:''' (1) Any ally unit or the Soleil is defeated; (2) Ally battleship, Big O, ∀ Gundam, or the Soleil is defeated; (3) Ally battleship, Big O, or ∀ Gundam is defeated. '''SR Point:''' Achieve the first victory condition within 4 turns. '''Secret Requirements:'''
*Gundam Mk-II [Black]
**If the condition is met, Amuro will join with a black Gundam Mk-II after the stage. If not, Amuro will join with a red Rick Dias [2nd unit].
*Spirit of Steel (4/6)
**Purchase the Makeup Kit ({{Ruby|化粧道具|けしょうどうぐ}}) from the Bazaar.
'''Unit Acquisition (post-stage):'''
*Gundam Mk-II [Black] (instead of Rick Dias [Red, 2nd])
*Big O (Roger)

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第２０話|だい２０わ}}：{{Ruby|ウソ|嘘}}のない{{Ruby|世界|せかい}} Scenario 20 - A World Without Lies'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Planetta or Mexbrute; (2) Defeat Planetta and the Emperor Kai.'''Victory Condition (includes hidden):''' (1) Defeat Mexbrute, or 4th turn reached; (2) Defeat Planetta and the Emperor Kai. '''Defeat Condition:''' (1) Any ally is defeated; (2) Ally battleship is defeated. '''SR Point:''' Defeat Mexbrute within 3 turns. '''Secret Requirements:'''
*Haro (3/6)
**Purchase the Signed CD (サイン{{Ruby|入り|いり}}ディスク) from the Bazaar.
*Dijeh requirement:
**Kamille, Quattro, Bright, Emma, Reccoa, Apolly, Roberto, Amuro, and Katz must have an '''average''' level of 25 or more by the end of Scenario 25.
**Amuro and Katz must have an '''average''' kill count of 25 or more by the end of Scenario 25.
'''Unit Acquisition:'''
*Nirvash (Renton and Eureka switch pilot spots for this stage)
*Renton gains the "Potential" and "Break Morale Limit" pilot skills, and the squad leader effect "All members of the platoon receive the effect of 'Morale+ (Evade)'".
*Eureka loses her squad leader effect for this stage.
'''Unit Acquisition (post-stage):'''
*Gatchiko (Gain)
*[Bazaar unit - Pacific route] Caprico
*[Bazaar unit] Promeus
|} 

==Stages 21 - 25==
{| width="70%"
|- class="fc-route-h"
| width="50%" |'''Setsuko Route'''
| width="50%" |'''Land Route'''

|-
| class="fc-route3" |'''{{Ruby|第２１話|だい２１わ}}：{{Ruby|残される|のこされる}}もの Scenario 21 - That Which Remains'''
| class="fc-route4" |'''{{Ruby|第２１話|だい２１わ}}：{{Ruby|父|ちち}}の{{Ruby|思い出|おもいで}} Scenario 21 - Memories of Father'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Shurouga; (3) Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Defeat all enemies, or 4th turn reached; (2) Defeat Shurouga, or 6th turn reached; (3) Defeat all enemies. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship, any Virgola unit is defeated. '''SR Point:''' Defeat Shurouga within 5 turns. '''Unit Acquisition:'''
*Chaos Leo (Lowen)
*Virgola Unit 1 (Setsuko)
*Virgola Unit 2 (Toby)
**All upgrades on Virgola Unit 2 are refunded.
**All PP obtained by Toby is transferred to Setsuko.
'''Unit Acquisition (post-stage):'''
*Setsuko moves to the Virgola Kai.
*Virgola Kai (Setsuko)
**Inherits upgrades from Virgola Unit 1.

|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) Gunleon is defeated; (2) Ally battleship, Gunleon or Shurouga is defeated. '''SR Point:''' Defeat all enemies within 3 turns. '''Unit Acquisition:'''
*Chaos Leo (Lowen)
*Shurouga (Asakim)

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第２２話|だい２２わ}}：{{Ruby|自分|じぶん}}だけのエクソダス Scenario 22 - My Own Exodus'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Dominator; (3) Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Battle Planetta, or defeat the Emperor Kai, or 3rd turn reached; (2) Defeat Dominator or 6th turn reached; (3) Defeat all enemies. '''Defeat Condition:''' (1) Ally battleship, or King Gainer, or Panther (Gauli) is defeated; (2) Ally battleship or King Gainer is defeated. '''SR Point:''' Defeat all other enemies, and then defeat Dominator within 5 turns. '''Secret Requirements:'''
*Rushrod (Yassaba) (4/4)
**Purchase the Overcoat (オーバーコート) from the Bazaar. The two items will combine to form the Rushrod.
**If you are playing as Land, Yassaba will join after stage 47.
**If you are playing as Setsuko, Yassaba will not join you.
'''Unit Acquisition (pre-deployment intermission):'''
*Gundam X gains the Satellite Cannon exchangeable parts
**Gundam X form [using Satellite Cannon parts]
'''Unit Acquisition:'''
*King Gainer gains the "Overfreeze Bullet" attack, an improved "Overskill" ability, +200 HP, +20 EN, +5 Hit Rate, +200 base damage for all existing attacks.
**Overskill : Activates when Oversense Level is at least 4 and 130+ Morale: +10+x Mobility, +10+x Hit Rate (x = Oversense Level), +1 Movement, Shadow(30% chance of full evasion)
*Gain moves to the Emperanza.
*Emperanza (Gain)
**Inherits upgrades from Gatchiko.
*Getter Dragon/Getter Liger/Getter Poseidon (Ryoma, Hayato, Benkei) aka Getter Robo G
'''Unit Acquisition (post-stage):'''
*[Bazaar unit] Dorbeck [green]
*Rushrod (No pilot)

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第２３話|だい２３わ}}：{{Ruby|百鬼|ひゃっき}}の{{Ruby|挑戦状|ちょうせんじょう}} Scenario 23 - Challenge from the Hyakki'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Mecha Dokuganki (Dokuganki) and Big Duo. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship is defeated. '''SR Point:''' Clear the map within 7 turns. '''Secret Requirements:'''
*Hero's Mark (3/5)
**Purchase the Natto ({{Ruby|納豆|なっと}}) from the Bazaar.
'''Unit Acquisition:'''
*Aquarion Luna/Solar Aquarion/Aquarion Mars (Reika, Apollo, Sirius) aka Aquarion
*Aquarion Luna temporarily cannot transform
*Lady Command (Michiru)
*Big O (Roger)
*Aquarion Luna (Reika) (pilot sets C & D) gains the "Shouryuu Tenrai" attack.
'''Unit Acquisition (post-stage):'''
*Sylvia, Pierre, Jun, and Tsugumi join as possible pilots for Aquarion (sets A, B, C, D, and E)

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第２４話|だい２４わ}}：{{Ruby|光子力|こうしりょく}}{{Ruby|研究所|けんきゅうしょ}}{{Ruby|奪還|だっかん}}{{Ruby|作戦|さくせん}} Scenario 24 - The Photon Power Laboratory Recapture Operation'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Mecha Tekkouki.'''Victory Condition (includes hidden):''' (1) Defeat Mecha Dokuganki (Dokuganki) or 4th turn reached; (2) Defeat Mecha Tekkouki. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat all other enemies, then defeat Mecha Dokuganki (Dokuganki) within 3 turns. '''Secret Requirements:'''
*Mecha Tekkouki (Tekkouki) (1/2)
**Sortie Ryoma/Hayato/Benkei's Getter Robo G. Have Ryoma's Getter Dragon battle Tekkouki's Mecha Tekkouki.
*Great Booster attack for Great Mazinger [Early] (1/2)
**Have Boss Borot (Boss) move to the southwestern edge of the Photon Power Laboratory (where Great Mazinger crashed into the barrier). Boss will find a fragment of the Great Booster there.
'''Unit Acquisition (pre-stage intermission):'''
*Kouji moves to the TFO
*TFO (Kouji)
**Obtained if the secret wasn't met earlier after stage 15.
'''Unit Acquisition:'''
*Kouji moves to the Mazinger Z
*Mazinger Z (Kouji)
*Great Mazinger (Tetsuya)
*Boss Borot (Boss, Nuke, Mucha)
*Diana A (Sayaka)
*Venus A (Jun)
*TFO becomes unavailable for this stage after the battle begins.
|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第２５話|だい２５わ}}：{{Ruby|闇|やみ}}の{{Ruby|住処|すみか}} Scenario 25 - Darkness' Lair'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; [If Getter Dragon battled Mecha Tekkouki in the previous stage, and Getter Robo G has been sortied and has survived] (2) Defeat Mecha Tekkouki.'''Victory Condition (includes hidden):''' (1) Defeat all enemies; [If Getter Dragon battled Mecha Tekkouki in the previous stage, and Getter Robo G has been sortied and has survived] (2) After the duel begins, defeat Mecha Tekkouki, or Getter Robo G is defeated, or 3 turns pass. '''Defeat Condition:''' (1) Ally battleship or Aquarion is defeated; (2) Ally battleship, Aquarion, or Mecha Tekkouki is defeated; (3) Ally battleship is defeated. '''SR Point:''' Achieve the first victory condition within 6 turns. '''Secret Requirements:'''
*Mecha Tekkouki (Tekkouki) (2/2)
**Sortie Ryoma/Hayato/Benkei's Getter Robo G and have it survive until you defeat all enemies. Getter Robo G (Ryoma, Hayato, Benkei) and Mecha Tekkouki (Tekkouki) will duel. Defeat Mecha Tekkouki (Tekkouki) within 3 turns. If the conditions are met, Tekkouki and his Mecha Tekkouki will join after the stage.
*Dijeh (1/2) + (2/2)
**By the end of this map, Kamille, Quattro, Amuro, Bright, Emma, Reccoa, Apolly, Roberto, and Katz must have an average level of at least 25.
**By the end of this map, Amuro and Katz must have an average kill count of at least 25. If you met the requirements, you will receive the Dijeh during the pre-deployment intermission next stage.
'''Unit Acquisition:'''
*Mecha Tekkouki (Tekkouki) (may become an enemy in the Getter Robo G - Mecha Tekkouki duel)
*Solar Aquarion (Apollo) (pilot sets A & C) gains the "Mugen Cross" attack.
*Aquarion Mars (Sirius) (pilot sets A & C) gains the "Zelotupia Gladius" attack.
*Only Aquarion pilot set A is available for this stage.
*Aquarion is forced to transform into Solar Aquarion after an event. Solar Aquarion is then temporarily unable to attack or transform.
*If the Getter Robo G vs Mecha Tekkouki duel takes place, all ZEUTH units other than Getter Robo G become unable to act for the rest of the stage.
**(Due to a glitch, when selecting a spirit command, Getter Robo G pilots can have allies cast some spirit commands (e.g. Trust, Cheer, Bless etc.) via the "-OTHERS COMMAND" side menu.)
*After the pre-deployment intermission, Eureka can no longer be trained using PP. (playing as Setsuko only)
'''Unit Acquisition (post-stage):'''
*Big O (Roger)
*Mecha Tekkouki (Tekkouki) (leaves due to route split immediately on Setsuko route)

|} 

==Stages 26 - 40==
{| width="100%"
|- class="fc-route-h"
| colspan="2" width="50%" |'''Setsuko Route''' Gravion Gundam SEED Destiny Zeta Gundam God Sigma Zambot Mazinger/Great Mazinger/Grendizer Turn A Gundam
| colspan="2" width="50%" |'''Land Route''' Eureka Seven Baldios Aquarion Xabungle Orguss Getter Robo G Gundam X King Gainer

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第２６話|だい２６わ}}：ホンコン・シティ Scenario 26 - Hong Kong City'''
| colspan="2" class="fc-route4" |'''{{Ruby|第２６話|だい２６わ}}：イントゥ・ザ・ネイチャー Scenario 26 - Into the Nature'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Psycho Gundam.'''Victory Condition (includes hidden):''' (1) Reduce either Asshimar (Buran), Windam (Neo), or the Garuda-class below 50% HP, or 5th turn reached; (2) Defeat Psycho Gundam. '''Defeat Condition:''' (1) Ally battleship is defeated; (2) Gran Kaiser/God Gravion is defeated. '''SR Point:''' Defeat Psycho Gundam within 6 turns. '''Secret Requirements:'''
*Gaia Gundam (Stella) Points +1
**Have Shinn's Impulse Gundam battle Stella's Gaia Gundam.
*Gaplant (Four) Points +1
**Have Kamille's Gundam Mk-II battle Four's Psycho Gundam.
*Gaplant (Four) Points +1
**Have Kamille's Gundam Mk-II defeat Four's Psycho Gundam.
*Dijeh
**If the conditions are met, you will obtain the Dijeh during the pre-deployment intermission.
'''Unit Acquisition (pre-deployment intermission):'''
*Dijeh (No pilot)

| colspan="2" |'''Victory Condition:''' (1) Have Nirvash reach the marked point; (2) Have Nirvash reach the marked point, or defeat Nirvash theEND.'''Victory Condition (includes hidden):''' (1) Have Nirvash move 9 spaces or more north from starting position, or 3rd turn enemy phase reached; (2) Have Nirvash reach the marked point, or defeat Nirvash theEND. '''Defeat Condition:''' Ally battleship or Nirvash is defeated. '''SR Point:''' Defeat all other enemies, then defeat Nirvash theEND within 6 turns. '''Secret Requirements:'''
*Shadow Angel Feather (1/5) + (2/5)
**Sortie Kei's Orguss (optional but makes this secret requirement easier). Have Kei's Orguss and Shaiya's Groma defeat at least 8 enemies total during this stage.
**Buy the Hong Kong Souvenir Video (ホンコン{{Ruby|土産|みやげ}}のビデオ) from the Bazaar.
'''Unit Acquisition (post-stage):'''
*[Bazaar unit] Government
*[Bazaar unit - Land route] Galapagos

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第２７話|だい２７わ}}：{{Ruby|生じる|しょうじる}}{{Ruby|亀裂|きれつ}} Scenario 27 - Rising Fissure'''
| colspan="2" class="fc-route4" |'''{{Ruby|第２７話|だい２７わ}}：{{Ruby|１５年目|１５ねんめ}}の{{Ruby|亡霊|ぼうれい}} Scenario 27 - The Ghost From 15 Years Ago'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) Ally battleship, ∀ Gundam or SUMO Gold Type is defeated; (2) Ally battleship, ∀ Gundam, SUMO Gold Type, or Impulse Gundam is defeated. '''SR Point:''' Defeat all enemies within 4 turns. '''Unit Acquisition (pre-stage):'''
*∀ Gundam gains +200 HP, +20 EN, +5 Mobility, +1 movement, flight, unit rank A for Sky terrain, 1 rank increase in Sky terrain for all attacks except for "Beam Rifle" and "Beam Rifle (Rapid Fire)", +200 base damage for all existing attacks, +1 maximum range/+25 Hit/+10% CT for "Beam Saber" attack, and the "Beam Drive Unit" attack.
 '''Unit Acquisition:'''
*SUMO Gold Type (Harry)
*Gran Kaiser can no longer form God Gravion.

| colspan="2" |'''Victory Condition:''' [1st half] Defeat Rasveht; [2nd half] (1) Move Terminus 909 into the marked area within 5 turns; (2) Defeat the Patulia.'''Victory Condition (includes hidden):''' [1st half] (1) Defeat Rasveht or 4th turn reached; [2nd half] (1) Move Terminus 909 into the marked area within 5 turns; (2) Defeat the Patulia. '''Defeat Condition:''' [1st half] Any ally unit is defeated; [2nd half] (1) Ally battleship or Terminus 909 is defeated, or 6th turn reached; (2) Ally battleship or Gundam X is defeated; (3) Ally battleship or Gundam Double X is defeated. '''SR Point:''' In the second half of the stage, defeat all enemies, then have Terminus 909 reach the marked area within 4 turns. '''Secret Requirements:'''
*Tiffa & G-Bits Points +1
**In the second half of the stage, have either Garrod's Gundam Double X or Jamil's Gundam X defeat the Patulia.
*G-Bits attack for Gundam X and Gundam Double X [Land route Exclusive Method] (1/3) + (2/3)
**You must have obtained at least 4 Tiffa & G-Bits Points by the end of this stage.
**Purchase the Black Box F (ブラックボックスＦ) from the Bazaar.
'''Unit Acquisition (second half):'''
*Garrod moves to the Gundam Double X.
*Gundam Double X (Garrod)
**Inherits upgrades from Gundam X.
*Jamil can now pilot Gundam X series mobile suits. Jamil moves to the Gundam X.
**Jamil's squad leader effect is changed to "Hit Rate +10% & Evade Rate +10%"
*Sarah takes over as Captain of the Freeden.
**Sarah gains Potential & Support Attack & Repair Skill & Commander pilot skills, and the "Adjacent allies' EN costs -10%" battleship captain effect.
**Sarah inherits all PP gained by Jamil.
*Renton becomes the main pilot of the Nirvash for the second half of the stage.
*Renton gains the "Potential" and "Break Morale Limit" pilot skills, and the squad leader effect "All members of the platoon receive the effect of 'Morale+ (Evade)'".
*Eureka becomes unavailable for the second half of the stage.
'''Unit Acquisition (post-stage):'''
*Jamil can now learn the "Blocking" and "Backup Attack" pilot skills.
*Sarah can now be trained using PP.
*Jamil can no longer captain the Freeden.

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第２８話|だい２８わ}}：{{Ruby|しろがね|白銀}}の{{Ruby|牙|きば}} Scenario 28 - Silver Fang'''
| colspan="2" class="fc-route4" |'''{{Ruby|第２８話|だい２８わ}}：{{Ruby|魂|たましい}}のコスプレイヤー Scenario 28 - Spirit Cosplayer'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat the Elder Battleship or all Krahgens; (3) Defeat Hyuduel.'''Victory Condition (includes hidden):''' (1) Battle a Krahgen, or move a unit into the southern area with Krahgens, or defeat 8 enemy squads, or 3rd turn enemy phase reached; (2) Defeat the Elder Battleship; alternatively, all Krahgens leave the map (by defeat or retreat); (3) Defeat Hyuduel. '''Defeat Condition:''' (1) Ally battleship or God Sigma is defeated; (2) Ally battleship, God Sigma, or Gran Kaiser/God Gravion is defeated. '''SR Point:''' Defeat at least 4 Krahgens, or defeat the Elder Battleship before all Krahgens leave the map. '''Secret Requirements:'''
*Aki Points +1
**Defeat all Mecha-Boost units (includes Krahgen (クラーゲン), Domira (ドミラ), and Kumoganira (クモガニラ)) before the Zeravire arrive.
***(Have ZEUTH prioritize impeding the Krahgens' movements. Avoid defeating all Krahgens until all other Mecha-Boost units are defeated.) (The Krahgens will attempt to retreat by reaching the east edge of the map. If all Krahgens are defeated or have retreated, or the Elder Battleship is defeated, all other Mecha-Boost units will also retreat.)
'''Unit Acquisition:'''
*Gran Kaiser (Touga) permanently becomes God Gravion (Touga, Eiji, Runa, Mizuki, Eina, Leele).
*God Gravion gains the "Choujuuken" attack.
*Gran Kaiser loses the "Gran Knights Attack" attack.

| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' [1st half] Any ally unit is defeated; [2nd half] (1) Ally battleship, Aquarion or Getter Robo G is defeated; (2) Ally battleship or Getter Robo G is defeated. '''SR Point:''' Clear the second half of the stage within 6 turns. '''Secret Requirements:'''
*Hero's Mark (4/5)
**Purchase the Smoked Giant Lizard ({{Ruby|大|だい}}トカゲのくんせい) from the Bazaar.
'''Unit Acquisition (second half):'''
*Getter Dragon gains +10 EN, +100 Armor, and the "Shine Spark" attack.
**Getter Liger gains +10 EN, +100 Armor.
**Getter Poseidon gains +10 EN.
*Solar Aquarion (pilot set A) gains the "Koujigen Mugen Attack" attack.
*Only Aquarion pilot set A is available for this stage.
*Getter Robo G is forced to transform into Getter Dragon at the start of the 2nd half of this stage. Getter Dragon is then temporarily unable to transform.

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第２９話|だい２９わ}}：{{Ruby|灼熱|しゃくねつ}}の{{Ruby|海原|うなばら}} Scenario 29 - The Boiling Sea'''
| colspan="2" class="fc-route4" |'''{{Ruby|第２９話|だい２９わ}}：アウトサイダー Scenario 29 - Outsider'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Asshimar (Bran), Gaplant (Rosamia), and Windam (Neo); (2) Defeat Mahiroo (Sweatson). '''Defeat Condition:''' Ally battleship, Gundam Mk-II or Virgola Kai is defeated. '''SR Point:''' Achieve the first victory condition within 5 turns. '''Secret Requirements:'''
*Gaia Gundam (Stella) Points +1
**Sortie Shinn's Impulse Gundam. Have Shinn's Impulse Gundam defeat Stella's Gaia Gundam.
*Gaplant (Four) Points +1
**Have Kamille's Gundam Mk-II defeat Four's Psycho Gundam.
*ZEUTH Points +1
**Defeat Freedom Gundam (Kira).
*ZEUTH Points +1
**Defeat the Archangel (Murrue).
'''Unit Acquisition:'''
*Minerva temporarily loses the "Tannhauser" and "Tannhauser (MAP)" attacks for this stage after an event.
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat GOUF Ignited and Nikick (Olson). '''Defeat Condition:''' (1) Ally battleship or Eliphas is defeated; (2) Ally battleship, Eliphas, or Orguss is defeated. '''SR Point:''' Achieve the first victory condition within 3 turns. '''Secret Requirements:'''
*ZEUTH Points +2 (Land - Gallia route starts here)
**Do not defeat any ZAFT soldiers.
*ZEUTH Points +1
**Have at least 3 platoons of ZAFT soldiers survive when you defeat Yzak's GOUF Ignited (cannot get this secret if you already obtained the ZEUTH Points +2 secret above).
*Shadow Angel Feather (3/5)
**Purchase the Emaan Souvenir Pennant (エマーン{{Ruby|土産|みやげ}}のペナント) from the Bazaar.
'''Unit Acquisition:'''
*Eliphas (Ziene)
*Orguss gains +200 HP, +5 Mobility, +5 Hit Rate, +50 Armor, +200 base damage for all attacks (except Full Volley), +300 base damage for Full Volley.
**Orguss Flyer gains +200 HP, +5 Mobility, +5 Hit Rate, +50 Armor, +200 base damage for all attacks, unit rank B for Ground and Sea terrains.

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第３０話|だい３０わ}}：{{Ruby|罪|つみ}}の{{Ruby|在処|ありか}} Scenario 30 - The Place of Sin'''
| colspan="2" class="fc-route4" |'''{{Ruby|第３０話|だい３０わ}}：アクペリエンス Scenario 30 - Acperience'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat the Garuda-class.'''Victory Condition (includes hidden):''' (1) Defeat Psycho Gundam, Windam (Neo), Chaos Gundam, Abyss Gundam, and Gaia Gundam; (2) Defeat the Garuda-class. '''Defeat Condition:''' Ally battleship, Saviour Gundam, or Impulse Gundam is defeated, or any enemy unit reaches the marked line. '''SR Point:''' Defeat Psycho Gundam within 5 turns. '''Secret Requirements:'''
*Gaplant (Four) Points +1
**Sortie Kamille in any unit. Have Kamille's unit defeat Four's Psycho Gundam.
*Gaia Gundam (Stella) Points +1
**Defeat Four's Psycho Gundam while Stella's Gaia Gundam is still on the map.
*Gaia Gundam (Stella) Points +1
**Have Shinn's Impulse Gundam defeat Stella's Gaia Gundam.
*ZEUTH Points +1
**Defeat Freedom Gundam (Kira).
*ZEUTH Points +1
**Defeat the Archangel (Murrue).
'''Unit Acquisition:'''
*The only battleship available for this stage is the King Beal (Heizaemon).
*Only the Force form of Impulse Gundam is available for this stage.
**Force Impulse Gundam cannot use Tactical Reload for this stage.
*Savior Gundam (Athrun) becomes unavailable for the rest of this stage after an event.

| colspan="2" |'''Victory Condition:''' Defeat all enemies.'''Victory Condition (includes hidden):''' Defeat all enemies, or 7th turn reached. '''Defeat Condition:''' (1) Ally battleship is defeated; (2) Ally battleship, Freedom Gundam, Murasame, or Esperanza is defeated. '''SR Point:''' Defeat all enemies within 6 turns. '''Secret Requirements:'''
*ZEUTH Points +1
**Do not have the Archangel (Murrue), Freedom Gundam (Kira), Murasame (Waltfeld), or Esperanza (Enil) defeat any enemies.
'''Unit Acquisition:'''
*Freedom Gundam (Kira)
*Murasame (Waltfeld)
*Esperanza (Enil)
*Archangel (Murrue, Neumann, Chandra)
*Nirvash (Eureka) becomes unavailable for this stage after battle begins.
*(Eureka)
**Eureka can no longer be trained using PP, but Eureka's skills and stats trained using PP are retained. Eureka loses her squad leader effect.
'''Unit Acquisition (post-stage):'''
*Renton becomes the main pilot of the Nirvash.
*Renton gains the "Potential" and "Break Morale Limit" pilot skills, and the squad leader effect "All members of the platoon receive the effect of 'Morale+ (Evade)'".

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第３１話|だい３１わ}}：{{Ruby|絆|きずな}}が{{Ruby|生む|うむ}}もの Scenario 31 - Born From Our Bonds'''
| colspan="2" class="fc-route4" |'''{{Ruby|第３１話|だい３１わ}}：{{Ruby|引き裂かれる|ひきさかれる}}{{Ruby|過去|かこ}} Scenario 31 - Shattered Past'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Nikick; (2) Defeat Eliphas.'''Victory Condition (includes hidden):''' (1) Defeat Nikick or 4th turn reached; (2) Defeat Eliphas. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship or Virgola Kai is defeated. '''SR Point:''' Defeat all other enemies, then defeat Nikick within 3 turns. '''Unit Acquisition:'''
*Chaos Leo (Lowen)

| colspan="2" |'''Victory Condition:''' (1) Move Nirvash or Terminus 909 adjacent to the Chiram Assault Aerial Mothership; (2) Defeat Eliphas. '''Defeat Condition:''' (1) Ally battleship, Gunleon, Terminus 909, or the Chiram Assault Aerial Mothership is defeated; (2) Ally battleship, Gunleon, Terminus 909, or Shurouga is defeated. '''SR Point:''' Defeat all other enemies, then achieve the first victory condition within 3 turns. '''Unit Acquisition:'''
*Chaos Leo (Lowen)
*Shurouga (Asakim) (becomes an enemy and retreats after the first victory condition is fulfilled)
*Terminus 909 (Holland) and Gunleon (Land) become unavailable for the rest of the stage after the first victory condition is fulfilled.
'''Unit Acquisition (post-stage):'''
*Nirvash (Renton)
|-
| colspan="2" class="fc-route3" |'''{{Ruby|第３２話|だい３２わ}}：{{Ruby|悲しみ|かなしみ}}という{{Ruby|力|ちから}} Scenario 32 - The Power Called Sadness'''
| colspan="2" class="fc-route4" |'''{{Ruby|第３２話|だい３２わ}}：{{Ruby|俺|おれ}}が{{Ruby|俺|おれ}}である{{Ruby|ため|為}}に Scenario 32 - So I Can Be Myself'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Gunleon; (2) Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Defeat Gunleon or 4th turn reached; (2) Defeat all enemies. '''Defeat Condition:''' (1) Virgola Kai (VWFS) is defeated; (2) Ally battleship is defeated. '''SR Point:''' After enemy reinforcements arrive, defeat all enemies within 4 turns. '''Secret Requirements:'''
*Bolinoak Sammahn (Sarah Zabiarov) & Palace Athene (Reccoa) (1/9)
**Take the Gibraltar Base route.
*ZEUTH Points
**To obtain a ZEUTH Point, take the Gibraltar Base route.
*Aki Points
**To obtain 3 Aki Points, take the Border Patrol route.
'''Unit Acquisition:'''
*Virgola Kai (Setsuko) becomes the Virgola Kai (VWFS) (Setsuko).
*Virgola Kai (VWFS) (Setsuko) becomes the Virgola Glory (Setsuko).
*Setsuko's ????? is unlocked, and is revealed to be the "SP Recovery" ability. Setsuko gains +5 to all stats.
'''Route-Exclusive Bazaar Units:'''
*To purchase the Asshimar from the Bazaar earlier, take the Gibraltar Base route.

| colspan="2" |'''Victory Condition:''' Defeat Shurouga. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat all other enemies, then defeat Shurouga within 4 turns. '''Secret Requirements:'''
*Xabungle [Unit 2] (1/4)
**Take the Look After the Ship route.
*Spearhead (Charles) & Spearhead (Ray) (1/3)
**Take the Search for Renton route.
*Haro (4/6)
**Take the Search for Renton route.
*Plasma Gimmick & O-Thunder attacks & Powerups for Big O [Early] (1/2)
**Take the Search for Renton route.
'''Unit Acquisition:'''
*Gunleon gains the "Pain Shouter" and "The Heat Crusher" attacks, the Resupply ability, and +30 EN & +10 Mobility.
'''Unit Acquisition (post-stage):'''
*Warning: If you decide to take the Search for Renton route, before moving onto the route-split, '''Chill needs be set as either the Walker Gallia's main pilot or its sub-pilot''', otherwise a disadvantageous bug will happen.
**If Chill is not set as the main pilot nor the sub-pilot of the Walker Gallia, Jiron will be forced to be the main pilot of Walker Gallia, and the sub-pilot slot of Walker Gallia will be kept empty. This cannot be changed during the first two stages of the route split.
**If Chill is set as the main pilot of the Walker Gallia, Jiron will be forced to be the sub-pilot of Walker Gallia. This cannot be changed during the first two stages of the route split.
'''Route-Exclusive Bazaar Units:'''
*To purchase the Mexbrute from the Bazaar earlier, take the Look After the Ship route.

|- class="fc-route-h"
| width="25%" |'''セツコをジブラルタル基地に向かわせる Have Setsuko head to the Gibraltar Base''' (Lowen) Zeta Gundam Gundam SEED Destiny Turn A Gundam
| width="25%" |'''セツコを周辺の警戒へ当たらせる Have Setsuko take part in border patrol''' (Lowen) Zambot Gravion God Sigma Mazinger/Grendizer
| width="25%" |'''レントンを探しに行く Search for Renton''' (Lowen) Gain Kei Jiron Chill Garrod
| width="25%" |'''艦で留守番 Look after the ship''' (Lowen) Eureka Seven Baldios King Gainer (minus Gain) Getter Robo G Gundam X (minus Garrod) Aquarion Xabungle (minus Jiron & Chill) Orguss (minus Kei)

|-
| class="fc-route3" |'''{{Ruby|第３３話|だい３３わ}}：{{Ruby|Ｚ|ゼータ}}の{{Ruby|鼓動|こどう}} Scenario 33 - Pulse of Zeta'''
| class="fc-route1" |'''{{Ruby|第３３話|だい３３わ}}：{{Ruby|星|ほし}}が{{Ruby|輝く|かがやく}}{{Ruby|時|とき}} Scenario 33 - When the Stars Shine'''
| class="fc-route2" |'''{{Ruby|第３３話|だい３３わ}}：ロンリー・ランナウェイ Scenario 33 - Lonely Runaway'''
| class="fc-route4" |'''{{Ruby|第３３話|だい３３わ}}：{{Ruby|遠き|とおき}}{{Ruby|友|とも}}へ Scenario 33 - O Distant Friend...'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Messala.'''Victory Condition (includes hidden):''' (1) Defeat all enemies or 6th turn reached; (2) Defeat Messala. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship is defeated. '''SR Point:''' Defeat all enemies within 5 turns. '''Unit Acquisition:'''
*Kamille moves to the Zeta Gundam
*Zeta Gundam/Waverider (Kamille) aka Ζ Gundam
**Inherits upgrades from Gundam Mk-II
*Methuss/Methuss (MA) [2nd] (Fa)
*Radish (Henken)
*The Gundam Mk-II becomes unavailable for the rest of the stage after Kamille moves to the Zeta Gundam.
'''Unit Acquisition (post-stage):'''
*Re-GZ (No pilot)
*Gundam Mk-II gains the G-Defenser exchangeable parts
**Super Gundam form (using G-Defenser parts)
**(Unfortunately, the G-Defenser parts cannot be equipped by the black Gundam Mk-II to allow you to have a black Super Gundam.)
*Hyaku Shiki gains the "Mega Bazooka Launcher" attack.
**Obtained if the secret wasn't met earlier after stage 19 (Pacific route).
*[Bazaar unit - Gibraltar Base route] Asshimar

|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat the Bandock.'''Victory Condition (includes hidden):''' (1) Defeat 7 enemy squads or 3rd turn reached; (2) Defeat the Bandock. '''Defeat Condition:''' (1) King Beal or Zambot 3 is defeated; (2) King Beal or Zambot 3 is defeated, or 8 turns pass. '''SR Point:''' Prevent the King Beal from taking damage. '''Secret Requirements:'''
*Aki Points +3
**Obtained upon stage clear.
'''Unit Acquisition (post-stage):'''
*Zambot 3 gains the "Ion Cannon" combination attack with King Beal, and +20 EN. This attack cannot be used by the King Beal.

|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) All allies are defeated; (2) Gundam Double X is defeated; (3) Spearhead (Charles) or Spearhead (Ray) is defeated. '''SR Point:''' Clear the map within 4 turns. '''Unit Acquisition:'''
*G-Falcon (Paula)
**Upgrades are inherited from and permanently shared with Gundam Double X.
*Esperanza (Enil)
*Gundam Double X can combine with the G-Falcon.
*Spearhead [blue] (Charles)
*Spearhead [red] (Ray)

|'''Victory Condition:''' (1) Defeat the Mecha Yousaiki; (2) Defeat all enemies; (3) After entering the Closed Space, defeat Jolar within 2 turns.'''Victory Condition (includes hidden):''' (1) Defeat the Mecha Yousaiki or 4th turn reached; (2) After Aldebaran reinforcements arrive, defeat 2 enemy platoons, or 1 turn passes and then enemy phase reached; (3) After entering the Closed Space, defeat Jolar within 2 turns. '''Defeat Condition:''' (1) Ally battleship is defeated; (2) Ally battleship, Baldios or Jolar is defeated; (3) Ally battleship or Baldios is defeated; or 3 turns pass after entering the Closed Space. '''SR Point:''' Defeat the Mecha Yousaiki within 3 turns. '''Unit Acquisition:'''
*Jolar (Flick) (becomes an enemy in the last part of the stage)
'''Unit Acquisition (post-stage):'''
*Baldios gains the "Pulsaber Dringing" attack, +500 HP, +20 EN, +5 Mobility, +5 Hit Rate, and +200 Armor.
*Grendizer/Spazer (Duke)
*Marine Spazer (Hikaru)
*[Bazaar unit - Look After the Ships route] Mexbrute

|-
| class="fc-route3" |'''{{Ruby|第３４話|だい３４わ}}：{{Ruby|偽り|いつわり}}の{{Ruby|女王|じょおう}}, {{Ruby|仮面|かめん}}の{{Ruby|姫|ひめ}} Scenario 34 - The False Queen and the Masked Princess'''
| class="fc-route1" |'''{{Ruby|第３４話|だい３４わ}}：この{{Ruby|星|ほし}}は{{Ruby|誰|だれ}}のもの Scenario 34 - To Whom Does This Planet Belong?'''
| class="fc-route2" |'''{{Ruby|第３４話|だい３４わ}}：ストレンジ・コンタクト Scenario 34 - Strange Contact'''
| class="fc-route4" |'''{{Ruby|第３４話|だい３４わ}}：{{Ruby|怒り|いかり}}の{{Ruby|鉄道|てつどう}}{{Ruby|王|おう}} Scenario 34 - The Angry Railroad King'''

|-
|'''Victory Condition:''' (1) Defeat all enemies; (2) Move ∀ Gundam adjacent to the Soleil.'''Victory Condition (includes hidden):''' Defeat 2 enemy squads, or Methuss is reduced below 10% HP, or battle Gaplant (Yazan), or 3rd turn reached; (2) Move ∀ Gundam adjacent to the Soleil. '''Defeat Condition:''' (1) Methuss (Reccoa) is defeated; (2) ∀ Gundam or the Soleil is defeated, or the Soleil reaches the edge of the map. '''SR Point:''' Defeat all Phantom Pain enemies (the red team) before moving ∀ Gundam adjacent to the Soleil. '''Secret Requirements:'''
*Bolinoak Sammahn (Sarah Zabiarov) & Palace Athene (Reccoa) (2/9)
**Sortie Katz in any unit. Have Katz's unit battle Sarah's Marasai.
'''Unit Acquisition:'''
*Battleships cannot be deployed for this stage.
**Impulse Gundam cannot use Tactical Reload for this stage.
*Methuss/Methuss (MA) (Reccoa)
**All upgrades on Reccoa's Methuss are refunded.
*SUMO Gold Type (Harry)

|'''Victory Condition:''' (1) Defeat the Elder Battleship; (2) Defeat all enemies. '''Defeat Condition:''' The King Beal, God Sigma or the Soleil is defeated. '''SR Point:''' Defeat all other enemies, then defeat the Elder Battleship before the Soleil leaves the map. '''Unit Acquisition:'''
*Grendizer/Spazer (Duke)
*Marine Spazer (Hikaru)
*Mazinger Z, Great Mazinger, and Grendizer gain the "Triple Mazinger Blade" combination attack. Mazinger Z must be piloted by Kouji, and Great Mazinger must be piloted by Tetsuya.
*God Sigma gains the "Sigma Breast Musouken" attack, +20 EN.

|'''Victory Condition:''' (1) Defeat Ishkick Commander (Robert); (2) Defeat Golem (Asuham), Galapagos (Horla), Dran, and Beck The Great RX3. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Nikick Olson, Nikick Athena, Walker Gallia, Emperanza, or Big O is defeated; (3) Nikick Olson, Nikick Athena, Walker Gallia, Emperanza, Big O, or Spearhead is defeated. '''SR Point:''' Clear the map within 6 turns. '''Secret Requirements:'''
*Plasma Gimmick & O-Thunder attacks & Powerups for Big O [Early] (2/2)
**Have Roger's Big O battle Beck's Beck The Great RX3, and have both units survive the battle. An event will trigger where the Big O unlocks new weaponry. If not met, the attacks/powerups will be gained after the stage.
'''Unit Acquisition:'''
*Nikick Olson (Olson)
*Nikick Athena (Athena)
*Spearhead [blue] (Charles)
*Big O (Roger)
*Big O gains the "Plasma Gimmick" and "O-Thunder" attacks, "B" rank in Sky terrain for the "Close Quarters Combat" and "Sudden Impact" attacks.
'''Unit Acquisition (post-stage):'''
*Regroup with the '''Look after the ship''' team
*Big O gains the "Plasma Gimmick" and "O-Thunder" attacks, "B" rank in Sky terrain for the "Close Quarters Combat" and "Sudden Impact" attacks. (if not unlocked during the stage)
|'''Victory Condition:''' Defeat Dominator. '''Defeat Condition:''' Ally battleship or King Gainer is defeated. '''SR Point:''' Defeat all other enemies, and then defeat Dominator within 5 turns. '''Unit Acquisition:'''
*The Groma (Shaiya) becomes unavailable for this stage after the battle begins.
'''Unit Acquisition (post-stage):'''
*Regroup with the '''Search for Renton''' team
*Terminus 909 (Holland)
*Terminus 606 (Hilda)
*Terminus 808 (Matthieu, Stoner)
*Gekkougou (Talho, Kengou, Happ)
|-
| class="fc-route3" |'''{{Ruby|第３５話|だい３５わ}}：{{Ruby|戦闘神|せんとうじん}}の{{Ruby|影|かげ}} Scenario 35 - Shadow of the War God'''
| class="fc-route1" |'''{{Ruby|第３５話|だい３５わ}}：{{Ruby|嘆き|なげき}}のロザリオ Scenario 35 - Rosary of Grief'''
| class="fc-route2" |'''{{Ruby|第３５話|だい３５わ}}：モーニング・グローリー Scenario 35 - Morning Glory'''
| class="fc-route4" |'''{{Ruby|第３５話|だい３５わ}}：オーバー・バトル Scenario 35 - Over Battle'''

|-
|'''Victory Condition:''' Reduce the Soleil to 10% HP within 7 turns. '''Defeat Condition:''' Ally battleship, SUMO Gold Type, or the Soleil is defeated, or 8th turn reached. '''SR Point:''' Defeat all other enemies, then achieve the victory condition. '''Secret Requirements:'''
*Bolinoak Sammahn (Sarah Zabiarov) & Palace Athene (Reccoa) (3/9)
**Sortie either Kamille or Katz in any unit. Have either Kamille's unit or Katz's unit defeat Sarah's Messala.
*ZEUTH Points +1
**Obtained upon stage clear.
'''Unit Acquisition:'''
*SUMO Gold Type (Harry)
*Freedom Gundam (Kira) (ally NPC)

|'''Victory Condition:''' (1) Defeat Gran Trooper; (2) Defeat all enemies.'''Victory Condition (includes hidden):''' (1) Defeat Gran Trooper or 4 enemy squads; (2) Defeat all enemies. '''Defeat Condition:''' (1) Ally battleship or God Gravion is defeated; (2) Ally battleship, God Gravion, or Gran Trooper is defeated. '''SR Point:''' Clear the map within 5 turns. '''Unit Acquisition:'''
*Gran Trooper (Fei) (ally NPC)
**Generic Phantom Pain platoons that are still on the map after fulfilling 1st victory condition. (ally NPCs)
**Gells-Ghe & Dagger-L x2 (Federation Soldiers)
**Gells-Ghe & Windam x2 (Federation Soldiers) (2 platoons)
**Asshimar & Gaplant x2 (Titans)
**Marasai & Hi-Zaku x2 (Titans) (3 platoons)
*(Mizuki & Leele)
*God Gravion loses the "Graviton Rifle" and "Gravity Crescent" attacks, and -500 base damage for the "Choujuuken" attack.

|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Spearhead (Charles) & Spearhead (Ray).'''Victory Condition (includes hidden):''' (1) Defeat all enemies or 4th turn reached; (2) Defeat Spearhead (Charles) & Spearhead (Ray). '''Defeat Condition:''' Any ally unit is defeated; (2) Ally battleship or Nirvash is defeated. '''SR Point:''' Defeat all other enemies, then defeat Spearhead (Charles) & Spearhead (Ray) within 6 turns. '''Secret Requirements:'''
*Spearhead (Charles) & Spearhead (Ray) (2/3) + (3/3)
**Have Renton persuade both Charles and Ray in any order.
**Have Renton's Nirvash defeat Charles's Spearhead as well as Ray's Spearhead in any order. If conditions are met, Charles's Spearhead and Ray's Spearhead will appear as reinforcements in the first half of the final stage (Normal or better ending).
*Haro (5/6)
**Purchase the Rare Wheel (レアなウィール) from the Bazaar.
'''Unit Acquisition:'''
*Eureka rejoins as a sub-pilot of the Nirvash.
*Nirvash (Renton, Eureka)
*Renton gains +5 to Melee and Shooting stats, and the ability to learn the "Bravery" spirit command.
**All PP gained by Eureka is transferred to Renton.
*Eureka becomes able to learn the "Zeal" spirit command.
'''Unit Acquisition (post-stage):'''
*Renton can now be trained using PP.
*[Bazaar unit - Search for Renton route] Mexbrute

|'''Victory Condition:''' Defeat the Overdevil. '''Defeat Condition:''' Ally battleship or King Gainer is defeated. '''SR Point:''' Defeat all other enemies, then defeat the Overdevil within 6 turns. '''Secret Requirements:'''
*Xabungle [Unit 2] (2/4) + (3/4)
**Defeat Brockary (Timp).
**Purchase the Computer Core (コンピューターコア) from the Bazaar.
'''Unit Acquisition:'''
*Big O gains the "Plasma Gimmick" and "O-Thunder" attacks, "B" rank in Sky terrain for the "Close Quarters Combat" and "Sudden Impact" attacks.
*Gainer's "Gamer" skill can now change into the "Game Champ" skill if Gainer obtains 100 kills.
'''Unit Acquisition (post-stage):'''
*Regroup with Renton and Eureka
*Terminus 909 (Holland)
*Terminus 606 (Hilda)
*Terminus 808 (Matthieu, Stoner)
*Gekkougou (Talho, Kengou, Happ)

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第３６話|だい３６わ}}：{{Ruby|慟哭|どうこく}}の{{Ruby|星空|ほしぞら}} Scenario 36 - The Wailing Night Sky'''
| colspan="2" class="fc-route4" |'''{{Ruby|第３６話|だい３６わ}}：{{Ruby|示される|しめされる}}{{Ruby|明日|あした}} Scenario 36 - Indicative Tomorrow'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Destroy Gundam; (2) Defeat Destroy Gundam and Psycho Gundam.'''Victory Condition (includes hidden):''' (1) Battle Destroy Gundam or Windam (Neo), or 4th turn enemy phase reached; (2) Defeat Destroy Gundam and Psycho Gundam. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat all other enemies before defeating Destroy Gundam and Psycho Gundam, within 6 turns. '''Secret Requirements:'''
*Gaia Gundam (Stella) Points +1
**Sortie Shinn's Impulse Gundam. Have Shinn's Impulse Gundam defeat Stella's Destroy Gundam.
*Gaia Gundam (Stella) Points +3
**Stella's Destroy Gundam is defeated while Four's Psycho Gundam is on the map.
***(If you use a MAP attack to defeat both at the same time, this will only give you the Gaplant (Four) +3 and NOT the Gaia Gundam (Stella) +3.)
*Gaia Gundam (Stella) Points +2
**Four's Psycho Gundam is defeated while Stella's Destroy Gundam is on the map, but this fails to give you enough points to fulfill the conditions to save Four (if you don't have enough SR points).
*Gaia Gundam (Stella) (1/1)
**By the end of this map, you must obtain at least 8 Gaia Gundam (Stella) Points (or at least 7 Points and 28+ SR points). Stella and her Gaia Gundam (not the Destroy Gundam) will join you later in the game. See ZEUTH route stage 51 and ZAFT route stage 56 for more information.
*Gaplant (Four) Points +1
**Sortie Kamille in any unit. Have Kamille's unit defeat Four's Psycho Gundam.
*Gaplant (Four) Points +3
**Four's Psycho Gundam is defeated while Stella's Destroy Gundam is on the map.
***(If you use a MAP attack to defeat both at the same time, this will only give you the Gaplant (Four) +3 and NOT the Gaia Gundam (Stella) +3.)
*Gaplant (Four) Points +2
**Stella's Destroy Gundam is defeated while Four's Psycho Gundam is on the map, but this fails to give you enough points to fulfill the conditions to save Stella (if you don't have enough SR points).
*Gaplant (Four) (1/1)
**By the end of this map, you must obtain at least 5 Gaplant (Four) Points (or at least 4 Points and 28+ SR Points). Four and her Gaplant (not the Psycho Gundam) will join you during stage 38.
*ZEUTH Points +1
**Meet the conditions to obtain the Gaia Gundam and to recruit Stella.
*Great Booster attack for Great Mazinger [Early] (2/2)
**Purchase the Photon Power Research Report ({{Ruby|光子力|こうしりょく}}{{Ruby|研究|けんきゅう}}レポート) from the Bazaar. The two items will combine to form the Great Booster for Great Mazinger. If the conditions are not met, the attack will be obtained during the stage 41 pre-deployment intermission.
'''Unit Acquisition:'''
*Archangel (Murrue) (ally NPC)
*Freedom Gundam (Kira) (ally NPC)
**Kei (Orguss) & M.Lover Maaie (Maaie) & M.Lover Lieea (Lieea) (ally NPCs)
**Gundam Double X (Garrod) & Gundam X (Jamil) & G-Falcon (Paula) (ally NPCs)
**Getter Dragon (Ryoma) (ally NPC)
**Baldios (Marin) (ally NPC)
'''Unit Acquisition (post-stage):'''
*Great Mazinger gains the "Great Booster" attack.
*[Bazaar unit - Border patrol route] Asshimar

| colspan="2" |'''Victory Condition:''' Defeat Destroy Gundam. '''Defeat Condition:''' Ally battleship or Freedom Gundam is defeated. '''SR Point:''' Defeat all other enemies, then defeat Destroy Gundam within 6 turns. '''Secret Requirements:'''
*ZEUTH Points +1
**Shinn's Force Impulse Gundam (as a NPC) battles Stella's Destroy Gundam.
*ZEUTH Points +2
**Shinn's Force Impulse Gundam (as a NPC) defeats Stella's Destroy Gundam.
*ZEUTH Points -1
**Kira's Freedom Gundam defeats Stella's Destroy Gundam.
*Shadow Angel Feather (4/5)
**Purchase the Chiram-made Bike (チラム{{Ruby|製|せい}}のバイク) from the Bazaar.
'''Unit Acquisition:'''
*Freedom Gundam (Kira)
*Archangel (Murrue, Neumann, Chandra)
*Minerva (Talia) (ally NPC)
*Force Impulse Gundam (Shinn) (ally NPC)
*Saviour Gundam (Athrun) & Blaze Zaku Phantom (Rey) & Gunner Zaku Warrior (Lunamaria) (ally NPCs)
**Zeta Gundam (Kamille) & Hyaku Shiki (Quattro) & Re-GZ (Amuro) (ally NPCs)
**Mazinger Z (Kouji) (ally NPC)
**Great Mazinger (Tetsuya) (ally NPC)
**Zambot 3 (Kappei) (ally NPC)
'''Unit Acquisition (post-stage):'''
*[Bazaar unit - Land route] Jenice Kai Enil Custom

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第３７話|だい３７わ}}：{{Ruby|新|しん}}{{Ruby|地球|ちきゅう}}{{Ruby|連邦|れんぽう}}{{Ruby|再編|さいへん}} Scenario 37 - Reshuffle in the New Earth Federation'''
| colspan="2" class="fc-route4" |'''{{Ruby|第３７話|だい３７わ}}：{{Ruby|粛清|しゅくせい}}の{{Ruby|嵐|あらし}} Scenario 37 - Purging Storm'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat all enemies by turn 4, player phase. '''Secret Requirements:'''
*Bolinoak Sammahn (Sarah Zabiarov) & Palace Athene (Reccoa) (4/9)
**Sortie either Kamille or Katz in any unit. Have either Kamille's unit or Katz's unit battle Sarah's Messala.

| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat Gundam Virsago CB and Gundam Ashtaron HC within 3 turns. Both retreat below 8000 HP.

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第３８話|だい３８わ}}：{{Ruby|踊る|おどる}}{{Ruby|悪夢|あくむ}} Scenario 38 - Dancing Nightmare'''
| colspan="2" class="fc-route4" |'''{{Ruby|第３８話|だい３８わ}}：{{Ruby|仕組まれた|しくまれた}}{{Ruby|決戦|けっせん}} Scenario 38 - Preplanned Showdown'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Freedom Gundam or the Archangel. (2) Defeat all enemies.'''Victory Condition (including hidden):''' (1) Defeat Freedom Gundam or the Archangel; alternatively but does not achieve the SR Point, Force Impulse Gundam is defeated; alternatively but does not achieve the SR Point, 5th turn reached. (2) Defeat all enemies. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Achieve the first victory condition within 4 turns. '''Secret Requirements:'''
*ZEUTH Points +2
**Shinn's Force Impulse Gundam is defeated while Kira's Freedom Gundam is on the map.
*ZEUTH Points +1
**Defeat Kira's Freedom Gundam without ever having Shinn's Force Impulse Gundam battle it.
*Gaplant (Four)
**If the conditions are met, Four and her Gaplant will join you after the 1st victory condition is fulfilled.
'''Unit Acquisition:'''
*Force Impulse Gundam gains the "Excalibur" attack.
*Daitarn 3/Daifighter/Daitank (Banjou)
*Gaplant (Four)
*Only the Force form of Impulse Gundam is available for this stage.
**Force Impulse Gundam cannot use Tactical Reload for this stage.

| colspan="2" |'''Victory Condition:''' Defeat Force Impulse Gundam or the Minerva.'''Victory Condition (including hidden):''' Defeat Force Impulse Gundam or the Minerva; alternatively but does not achieve the SR Point, Freedom Gundam is defeated; alternatively but does not achieve the SR Point, 5th turn reached. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Achieve the victory condition within 4 turns. '''Secret Requirements:'''
*ZEUTH Points +1
**Defeat Shinn's Force Impulse Gundam.
*ZEUTH Points -1
**Kira's Freedom Gundam is defeated.
'''Unit Acquisition (post-stage):'''
*Freedom Gundam (Kira)
*Archangel (Murrue, Neumann, Chandra)
*Orguss II/Orguss II Flyer (Olson)

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第３９話|だい３９わ}}：レイズ・ザ・フラッグ Scenario 39 - Raise the Flag'''
| colspan="2" class="fc-route4" |'''{{Ruby|第３９話|だい３９わ}}：スタート・イット・アップ Scenario 39 - Start It Up'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all Coralians.'''Victory Condition (including hidden):''' Defeat 75 Coralians units in total, or 6th turn reached. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat at least 75 Coralians within 5 turns.

| colspan="2" |'''Victory Condition:''' Defeat all enemies.'''Victory Condition (including hidden):''' (1) Defeat the Federation Army Aerial Battleship (Jurgens) or Nirvash theEND, or 4th turn reached. (2) After Coralian reinforcements arrive, defeat all enemies, or 3 turns pass. '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' After the Coralians arrive, defeat all enemies within 3 turns. '''Secret Requirements:'''
*Hero's Mark (5/5)
**Go to the Bazaar to obtain the Hero's Mark enhancement part.
'''Unit Acquisition:'''
*Nirvash (Renton, Eureka) becomes Nirvash spec2 (Renton, Eureka).
*Orguss and Orguss II gain the "Orguss Combination" combination attack.

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第４０話|だい４０わ}}：インパクト･アゲイン Scenario 40 - Impact Again'''
| colspan="2" class="fc-route4" |'''{{Ruby|第４０話|だい４０わ}}：{{Ruby|崩壊|ほうかい}}{{Ruby|序曲|じょきょく}} Scenario 40 - Prelude to Destruction'''

|-
| colspan="2" |'''Victory Condition:''' Reduce the Garuda-class below 2000 HP.'''Victory Condition (includes hidden):''' Reduce the Garuda-class below 2000 HP; alternatively but does not achieve the SR point, 7th turn reached. '''Defeat Condition:''' Ally battleship or the Garuda-class is defeated. '''SR Point:''' Achieve the victory condition within 6 turns. '''Secret Requirements:'''
*Aki Points +1
**Defeat the Bandock (Butcher).

| colspan="2" |'''Victory Condition:''' (1) Defeat the Garuda-class; (2) Defeat the Garuda-class or Cherubim Sur le Kubera.'''Victory Condition (includes hidden):''' (1) 2nd turn reached; (2) Defeat the Garuda-class or Cherubim Sur le Kubera, or 7th turn reached. (Note: If you manage to defeat the Garuda-class on the first turn, the victory condition will instead become "Defeat all enemies, or 7th turn reached.") '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat Cherubim Sur le Kubera within 6 turns. '''Secret Requirements:'''
*Aki Points +2
**Defeat the Bandock (Butcher).
'''Unit Acquisition:'''
*Talho becomes able to learn the "Trust" and "Love" spirit commands.
* Talho loses the "Valor" spirit command.
*Moondoggie joins as a sub-pilot of the Gekkougou.

|} 

==Stages 41 - 47==
{| width="70%"
|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第４１話|だい４１わ}}：クロス・ポイント Scenario 41 - Cross Point'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat the Emaan Ship; (2) Defeat Ishkick Commander II (Roberto).'''Victory Condition (includes hidden):''' (1) Defeat the Emaan Ship or 4th turn reached; (2) Defeat Ishkick Commander II (Roberto). '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Clear the map within 5 turns. '''Secret Requirements:'''
*Ending Points +1
**Do not defeat any Emaan units aside from the Emaan Ship.
*Ending Points -1
**Defeat all Emaan units aside from the Emaan Ship.
*Ending Points +1
**Sortie Olson's Orguss II. Have Olson persuade Athena.
***(Note that Kei needs to persuade Athena first to fulfill the early Athena recruitment secret.)
*Nikick Athena (Athena) [Early] (1/2) + (2/2)
**Sortie both Kei's Orguss and Olson's Orguss II. Have Kei persuade Athena '''first'''.
**Have Olson persuade Athena second. An event will occur where Athena turns on Chiram and joins ZEUTH. If not met, Athena will join after the stage. The two steps must be done in the correct order, or else the event will not occur.
*Shadow Angel Feather (5/5)
**Go to the Bazaar to obtain the Shadow Angel Feather enhancement part.
'''Unit Acquisition:'''
*Nikick Athena (Athena)
*Great Mazinger gains the "Great Booster" attack.
**Obtained if the secret wasn't met earlier after stage 36 (Setsuko route), or playing on Land route.
*Mazinger Z, Great Mazinger, and Grendizer gain the "Triple Mazinger Blade" combination attack. Mazinger Z must be piloted by Kouji, and Great Mazinger must be piloted by Tetsuya.
'''Unit Acquisition (post-stage):'''
*Nikick Athena (Athena) (if not recruited during the stage)
*[Bazaar unit] Golem
*[Bazaar unit - Setsuko route] Galapagos
*[Bazaar unit - Setsuko route] Jenice Kai Enil Custom

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第４２話|だい４２わ}}：{{Ruby|終章|しゅうしょう}}{{Ruby|開幕|かいまく}} Scenario 42 - The Beginning of the End'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' (1) Ally battleship, Zambot 3, Daitarn 3, or God Gravion is defeated; (2) Ally battleship, Zambot 3, Daitarn 3, or Gran Trooper is defeated. '''SR Point:''' Clear the map within 6 turns. '''Secret Requirements:'''
*Ending Points +1
**Fulfill the secret "Saving Aki".
*Saving Aki (1/1)
**At the start of this map, you must have obtained at least 7 Aki Points, or at least 4 Aki Points and 32 SR Points (Land route only). If conditions are met, Aki will survive the events of the stage.
'''Unit Acquisition:'''
*Gran Trooper (Fei)
*Daitarn 3 and Zambot 3 gain the "Space Combination" combination attack.
*God Gravion (Touga, Eiji, Runa, Eina)
**(Eina) - Eina leaves as the sub-pilot of God Gravion.

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第４３話|だい４３わ}}：{{Ruby|運命|うんめい}}と{{Ruby|自由|じゆう}}と Scenario 43 - Destiny and Freedom'''

|-
| colspan="2" |'''Victory Condition:''' [1st half] Defeat Saviour Gundam; [2nd half] Defeat the Salamis Kai.'''Victory Condition (includes hidden):''' [1st half] Defeat Saviour Gundam, or 4th turn reached; [2nd half] Defeat the Salamis Kai. '''Defeat Condition:''' [1st half] Any ally unit is defeated; [2nd half] (1) Eternal or SUMO Gold Type is defeated; (2) Eternal, SUMO Gold Type, or Turn X is defeated. '''SR Point:''' In the second half of the stage, defeat all other enemies, then defeat the Salamis Kai within 5 turns. '''Secret Requirements:'''
*ZEUTH Points +1 & Ending Points +1
**In the first half of the stage, do not defeat Athrun's Saviour Gundam. The map will be cleared upon reaching 4th turn.
*ZEUTH Points -1
**In the first half of the stage, have Shinn's Destiny Gundam defeat Athrun's Saviour Gundam.
*Ending Points -1
**In the first half of the stage, have Rey's Legend Gundam defeat Athrun's Saviour Gundam.
*GOUF Ignited (Yzak) (1/3)
**In the second half of the stage, have Kira's Strike Freedom Gundam defeat Yzak's GOUF Ignited.
'''Unit Acquisition (first half):'''
*The rest of ZEUTH is unavailable for this stage half.
*Shinn moves to the Destiny Gundam.
*Destiny Gundam (Shinn)
**Inherits upgrades from Impulse Gundam.
*Rey moves to the Legend Gundam.
*Legend Gundam (Rey)
**Inherits upgrades from Blaze Zaku Phantom.
*Saviour Gundam (Athrun)
*(Meyrin)
'''Unit Acquisition (second half):'''
*The rest of ZEUTH is unavailable for this stage half.
*SUMO Gold Type (Harry)
*Gaia Gundam [Red] (Waltfeld)
*Eternal (Lacus)
*Turn X (Gym)
*Kira moves to the Strike Freedom Gundam.
*Strike Freedom Gundam (Kira)
**Inherits upgrades from Freedom Gundam.
'''Unit Acquisition (post-stage):'''
*Lunamaria can now pilot the Impulse Gundam. Lunamaria moves to the Impulse Gundam.
*Amuro moves to the Nu Gundam.
*Nu Gundam (Amuro) aka ν Gundam
*Amuro's squad leader effect gains "Crit Rate +10%"
*Shinn can no longer pilot the Impulse Gundam.
*Rey can no longer pilot other units.

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第４４話|だい４４わ}}：{{Ruby|舞い降りる|まいおりる}}{{Ruby|太陽|たいよう}} Scenario 44 - The Falling Sun'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat the Artificial Sun; (2) After Sol Gravion arrives, defeat the Artificial Sun within 3 turns.'''Victory Condition (includes hidden):''' (1) Battle the Artificial Sun, or battle the Battle Airship (Aphrodia), or defeat 4 or more total enemy squads/ships, or 3rd turn is reached. (2) Midifo (Rubina) reaches the marked area, or defeat Battle Airship (Aphrodia), or defeat Battle Airship (Negros), or Midifo (Rubina) is defeated. (3) After God Gravion arrives, battle the Artificial Sun; alternatively, after the Shadow Angels arrive, defeat 5 or more total enemy squads/ships, or the next player phase is reached. (4) After Sol Gravion arrives, battle the Artificial Sun or the next player phase is reached. (5) Defeat the Artificial Sun, or Fixer-1 survives until the end of 3 turns after the arrival of Sol Gravion. '''Defeat Condition:''' (1) Ally battleship is defeated; (2) Ally battleship is defeated, or 3 turns pass after Sol Gravion appears.'''Defeat Condition (includes hidden):''' (1) Ally battleship is defeated; (2) Ally battleship is defeated; alternatively, 3 turns pass after Sol Gravion appears and Fixer-1 has been defeated. (The last defeat condition will trigger a special game over event unique to this stage.) '''SR Point:''' Defeat all other enemies before defeating the Artificial Sun. '''Secret Requirements:'''
*(Rubina) (1/2) + (2/2)
**After Rubina's Midifo (as an NPC) arrives:
**1) Prevent Rubina's Midifo from being defeated.
**2) While Rubina's Midifo is on the map, do any of:
***a) Assist in having Rubina's Midifo (as an NPC) reach the marked area to the northeast;
***b) Defeat Battle Airship (Aphrodia);
***c) Defeat Battle Airship (Negros).
**The Midifo will escape the battle and Rubina will join you after the stage. If the Midifo is defeated, it will escape anyway, but Rubina will not join you.
*Ending Points +1
**Meet the conditions to recruit Rubina.
*Ending Points +1
**Defeat the Artificial Sun.
*Ending Points +1
**Sortie Apollo's Solar Aquarion and have it defeat Futaba's Cherubim Soldier.
*Baldirosier attack for Baldios [1st method] (1/1)
**Sortie Marin's Baldios and have it survive the stage. Defeat the Artificial Sun using any unit. Marin's Baldios will use Baldirosier to defeat the Artificial Sun again in an event.
'''Unit Acquisition:'''
*Mizuki rejoins as a sub-pilot of the God Gravion.
*God Gravion (Touga, Eiji, Runa, Mizuki)
**God Gravion regains the "Graviton Rifle" attack.
*Gran Trooper (Fei)
*Touga, Eiji, Runa, and Mizuki move to the Sol Gravion.
*Leele and Eina rejoin as sub-pilots of the Sol Gravion.
*Sol Gravion (Touga, Eiji, Runa, Mizuki, Leele, Eina)
**Inherits upgrades from God Gravion.
*Fixer-1 (David)
*Midifo (Rubina) (ally NPC)
'''Unit Acquisition (post-stage):'''
*Baldios gains the "Baldirosier" attack.
*(Rubina)

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第４５話|だい４５わ}}：{{Ruby|遺産|いさん}}の{{Ruby|継承者|けいしょうしゃ}} Scenario 45 - Inheritors of the Legacy'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat all Destroy Gundams and Psycho Gundams.'''Victory Condition (includes hidden):''' (1) Have Walker Gallier (plus Xabungle) or Terminus 909 reach the marked point; alternatively, defeat either the Garuda-class, or Gundam Virsago CB, or Gundam Ashtaron HC. (2) Defeat all Destroy Gundams and Psycho Gundams. '''Defeat Condition:''' (1) Ally battleship, Terminus 909, Walker Gallia, or Xabungle is defeated; (2) Ally battleship is defeated; (3) Ally battleship, Terminus 909, or Doran is defeated. '''SR Point:''' Clear the map within 5 turns. '''Secret Requirements:'''
*Ending Points +1
**Have either Jiron's Walker Gallia (plus Elche's Xabungle) or Holland's Terminus 909 reach the marked area.
*Ending Points +1
**Prevent any Titans unit from being defeated.
*Xabungle [Unit 2] (4/4)
**Purchase the High-Power Gasoline Engine ({{Ruby|高性能|こうせいのう}}ガソリンエンジン) from the Bazaar. The two items will combine to form the second Xabungle.
'''Unit Acquisition:'''
*Elche becomes a Walker Machine pilot, and moves to the Xabungle's main-pilot seat.
**Elche's squad leader effect changes to "PLA weapon attack power +20%".
*Doran (Birin, Maria)
*Walker Gallia gains the "ICBM Throw" attack.
*Byarlant (Jerid) (neutral ally NPC)
*Byarlant (Mouar) (neutral ally NPC)
**Generic Titans (neutral ally NPCs)
**Byarlant x2 (Titans, subordinates of Jerid)
**Byarlant x2 (Titans, subordinates of Mouar)
**Gabthley x3 (Titans) (3 platoons)
*The Iron Gear and the Freeden (Sarah) are not available for this stage.
'''Unit Acquisition (post-stage):'''
*Xabungle [2nd] (No Pilot)
*[Bazaar unit] Messala
*[Bazaar unit] Gabthley

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第４６話|だい４６わ}}：{{Ruby|混迷|こんめい}}の{{Ruby|中|なか}}の{{Ruby|正義|せいぎ}} Scenario 46 - Justice Amongst the Chaos'''

|-
| colspan="2" |'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat Crowda (Lancerow).'''Victory Condition (includes hidden):''' (1) Defeat 12 total enemy squads/ships, or 5th turn is reached; (2) Defeat Crowda (Lancerow). '''Defeat Condition:''' (1) Ally battleship is defeated; (2) Ally battleship or Strike Freedom Gundam is defeated. '''SR Point:''' Clear the map within 4 turns. '''Secret Requirements:'''
*Ending Points +1
**Defeat 12 total enemy squads/ships within 4 turns. Squads/ships defeated by Athrun's Murasame squad do not count towards this secret.
'''Unit Acquisition:'''
*Athrun's ????? is unlocked, and is revealed to be the "SEED" ability.
*Athrun moves to a Murasame.
*Athrun (Murasame) (neutral ally NPC)
**Generic Orb Soldiers (neutral ally NPCs)
**Murasame x2 (Orb Soldiers, subordinates of Athrun)
*Strike Freedom Gundam (Kira)
*Archangel (Murrue, Neumann, Chandra)
*SUMO Gold Type (Harry)
*Athrun moves to the Infinite Justice Gundam.
*Infinite Justice Gundam (Athrun)
**Inherits upgrades from Saviour Gundam.
*Akatsuki Oowashi (Neo)
*The Iron Gear (Elche) and the Freeden (Sarah) are not available for this stage.
'''Unit Acquisition (post-stage):'''
*Bertigo (Caris)
*(Despite Tiffa's departure, Gundam X / Gundam Double X continue to have access to the Satellite Cannon / Twin Satellite Cannon attacks.)

|- class="fc-route-h"
| width="50%" |'''Setsuko Route'''
| width="50%" |'''Land Route'''

|-
| class="fc-route3" |'''{{Ruby|第４７話|だい４７わ}}：カウント・ダウン Scenario 47 - Count Down'''
| class="fc-route4" |'''{{Ruby|第４７話|だい４７わ}}：{{Ruby|俺達|おれたち}}の{{Ruby|行き先|いきさき}} Scenario 47 - What Lies Ahead'''

|-
|'''Victory Condition:''' (1) Defeat the two enemy Virgolas; (2) Defeat either Chaos Leo, Chaos Anguis, or Chaos Caper. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship is defeated. '''SR Point:''' After the CHIMERA arrive, clear the map within 4 turns. '''Secret Requirements:'''
*Ending Points +1
**Defeat Virgola Unit 1 (Denzel) and Virgola Unit 2 (Toby) within 4 turns.
*ZEUTH Route (1/1)
**Option 1: By the end of this map, obtain at least 10 ZEUTH Points & 36+ SR Points, or be playing on New Game+. You will be allowed to choose between ZEUTH route and ZAFT route.
**Option 2: If the above conditions are not met, you must instead obtain at least 9 ZEUTH Points, or 7-8 ZEUTH Points & 36+ SR Points. You will automatically take ZEUTH route.
*Qubeley (Haman) (1/1)
**Take the ZEUTH route. Haman and her Qubeley will join you after stage 51.
*Legend Gundam (Rey) & Minerva (Talia) (1/5)
**Take the ZEUTH route.
*GOUF Ignited (Yzak) (2a/3)
**Taking the ZEUTH route will skip the step 2 requirement.
'''Unit Acquisition:'''
*Chaos Leo (Lowen) cannot act during this stage.
*Chaos Leo (Lowen)
**All upgrades on the Chaos Leo are refunded.
*Virgola Glory gains the "EN Regen (Small)" ability, +300 base damage for the "High Straight Turret" attack, and +500 base damage for the "Nautilus Carver" and the "The Glory Star" attacks.
*The Minerva (Talia) and the Argama (Bright) are not available for this stage.
**Impulse Gundam cannot use Tactical Reload for this stage.
'''Unit Acquisition (post-stage):'''
*Setsuko gains +5 to Skill stat.
*Terminus 909
*Holland moves to the Terminus 303
*Terminus 303 (Holland)
**Inherits upgrades from the Terminus 909.
*Corin Kapool (Corin)
*[Bazaar unit] Re-GZ [2nd]
*[Bazaar unit] Eagail
*'''If ZAFT route was chosen:'''
**Destiny Gundam (Shinn)
**Legend Gundam (Rey)
**Impulse Gundam (Lunamaria)
**Minerva (Talia, Arthur)
**Freeden (Sara, Tonya, Shingo)
**Iron Gear (Cotset)
**Elche and Fatman become Walker Machine pilots. The following effects take place '''only''' while being pilots.
***Elche's squad leader effect is changed to "PLA weapon attack power +20%".
***Elche can now learn the "Backup Attack" and "Resupply Skill" pilot skills.
***Fatman gains "Guts" and "Drive" spirit commands, the "Damage taken -30%" squad leader effect, and +8 SP. Fatman's pilot statistics are revealed (Melee, Ranged, Skill, Defense, Evade, Hit Rate, Air, Ground, Sea, Space). Fatman can be trained using PP.
**Fatman inherits all PP gained by Elche.
|'''Victory Condition:''' (1) Defeat all enemies; (2) Defeat either Chaos Leo, Chaos Anguis, or Chaos Caper. '''Defeat Condition:''' (1) Any ally unit is defeated; (2) Ally battleship is defeated; (3) Ally battleship, or Dogozzo (Yassaba) is defeated. '''SR Point:''' After the CHIMERA arrive, clear the map within 3 turns. '''Secret Requirements:'''
*Ending Points +1
**Have Land's Gunleon battle Asakim's Shurouga.
*(Yassaba)
**If conditions are met, Yassaba will join after the stage.
*Spirit of Steel (5/6)
**Purchase the Bouquet of Flowers ({{Ruby|花束|はなたば}}) from the Bazaar.
*ZEUTH Route (1/1)
**Option 1: By the end of this map, obtain at least 8 ZEUTH Points & 36+ SR Points, or be playing on New Game+. You will be allowed to choose between ZEUTH route and ZAFT route.
**Option 2: If the above conditions are not met, you must instead obtain at least 9 ZEUTH Points, or 7 ZEUTH Points & 36+ SR Points. You will automatically take ZEUTH route.
*Qubeley (Haman) (1/1)
**Take the ZEUTH route. Haman and her Qubeley will join you after stage 51.
*Legend Gundam (Rey) & Minerva (Talia) (1/5)
**Take the ZEUTH route.
*GOUF Ignited (Yzak) (2a/3)
**Taking the ZEUTH route will skip the step 2 requirement.
'''Unit Acquisition:'''
*(Despite the events in the stage, Mel can only unlock her ????? skill, which is revealed to be the "SP Recovery" skill upon reaching level 50.)
*Shurouga (Asakim) (becomes an enemy in the latter half of the stage)
*Dogozzo (Yassaba)
*Dogozzo (Kejinan)
*Dogozzo (Enge)
*Chaos Leo (Lowen)
**All upgrades on the Chaos Leo are refunded.
*The Minerva (Talia) and the Argama (Bright) are not available for this stage.
**Impulse Gundam cannot use Tactical Reload for this stage.
'''Unit Acquisition (post-stage):'''
*Terminus 909
*Holland moves to the Terminus 303
*Terminus 303 (Holland)
**Inherits upgrades from the Terminus 909.
*Corin Kapool (Corin)
*(Yassaba)
*[Bazaar unit] Re-GZ [2nd]
*[Bazaar unit] Eagail
*'''If ZAFT route was chosen:'''
**Destiny Gundam (Shinn)
**Legend Gundam (Rey)
**Impulse Gundam (Lunamaria)
**Minerva (Talia, Arthur)
**Freeden (Sara, Tonya, Shingo)
**Iron Gear (Cotset)
**Elche and Fatman become Walker Machine pilots. The following effects take place '''only''' while being pilots.
***Elche's squad leader effect is changed to "PLA weapon attack power +20%".
***Elche can now learn the "Backup Attack" and "Resupply Skill" pilot skills.
***Fatman gains the ability to learn "Guts" and "Drive" spirit commands, the "Damage taken -30%" squad leader effect, and +8 SP. Fatman's pilot statistics are revealed (Melee, Ranged, Skill, Defense, Evade, Hit Rate, Air, Ground, Sea, Space). Fatman can be trained using PP.
**Fatman inherits all PP gained by Elche.
|} 

==Stages 48 - 58==
{| width="70%"
|- class="fc-route-h"
| width="50%" |'''ZEUTHとして戦う Fight as part of ZEUTH''' (Requires [[Super_Robot_Wars/Z/Secrets#ZEUTHPoints|'''ZEUTH Points]])
| width="50%" |'''ザフトへ戻る Return to ZAFT''' (Default Route)

|-
| class="fc-route1" |'''{{Ruby|第４８話|だい４８わ}}：{{Ruby|楽園|らくえん}}の{{Ruby|追放者|ついほうしゃ}} Scenario 48 - Eden's Castaways'''
| class="fc-route2" |'''{{Ruby|第４８話|だい４８わ}}：{{Ruby|裏切り|うらぎり}}の{{Ruby|月光|げっこう}} Scenario 48 - Duplicitous Moonlight'''

|-
|'''Victory Condition:''' (1) Defeat the Mecha Yousaiki; (2) Defeat Aquarion Alpha. '''Defeat Condition:''' Ally battleship or Aquarion is defeated. '''SR Point:''' Defeat all other enemies, then defeat the Mecha Yousaiki within 4 turns. '''Secret Requirements:'''
*Ending Points +1
**Defeat Big Duo Inferno (Alan).
*Assault Type Aquarion [Early] (1/2) + (2/2)
**Defeat both Aquarion Omega and Aquarion Delta.
**Purchase the Vector Machine (ベクターマシン) from the Bazaar. The Assault Type Aquarion (Aquarion Alpha/Aquarion Omega/Aquarion Delta) will be obtained immediately. If not met, the unit will be obtained after stage 53.
'''Unit Acquisition:'''
*Only Aquarion pilot set C is available for this stage.
'''Unit Acquisition (post-stage):'''
*Eureka becomes able to learn the "Wish" spirit command.
*Aquarion Mars & (Sirius)
**Aquarion pilot sets A and C become unavailable.
*Aquarion Mars form is replaced by Aquarion Angel form.
*Aquarion Alpha/Aquarion Omega/Aquarion Delta (Only pilot set B: Reika/Jun/Tsugumi) aka Assault Type Aquarion

|'''Victory Condition:''' (1) Defeat the Elder Battleship; (2) Defeat GOUF Ignited (Yzak). '''Defeat Condition:''' Ally battleship is defeated. '''SR Point:''' Defeat all other enemies, then defeat the Elder Battleship within 4 turns. '''Secret Requirements:'''
*Yzak (2b/3)
**Have Athrun persuade Yzak.
*Ending Points -1
**After the ZAFT arrive, defeat all ZAFT platoons/ships aside from Yzak's platoon.
'''Unit Acquisition:'''
*Strike Freedom Gundam (Kira) aka S Freedom Gundam
*Infinite Justice Gundam (Athrun) aka ∞ Justice Gundam
*Akatsuki (Neo) [base unit]
**Oowashi [Exchangeable parts]
**Akatsuki form [using Oowashi parts]
*Archangel (Murrue, Neumann, Chandra)
'''Unit Acquisition (post-stage):'''
*Akatsuki gains the Shiranui exchangeable parts
**Akatsuki form [using Shiranui parts]

|-
| class="fc-route1" |'''{{Ruby|第４９話|だい４９わ}}：{{Ruby|幻想|げんそう}}のメトロポリス Scenario 49 - Illusionary Metropolis'''
| class="fc-route2" |'''{{Ruby|第４９話|だい４９わ}}：{{Ruby|絶望|ぜつぼう}}の{{Ruby|光|ひかり}}, {{Ruby|希望|きぼう}}の{{Ruby|灯|ともしび}} Scenario 49 - Light of Despair, Glimmer of Hope'''

|-
|'''Victory Condition:''' (1) Defeat Big Duo Inferno; (2) Defeat the Kagaku Yousaitou. '''Defeat Condition:''' (1) Big O is defeated; (2) Ally battleship is defeated. '''SR Point:''' Defeat Big Duo Inferno within 4 turns. '''Secret Requirements:'''
*Big O Final Stage attack and powerups for Big O [Early] (ZEUTH route) (1/1)
**Have Roger's Big O survive until Alan's Big Duo Inferno is defeated. Roger's Big O will use Big O Final Stage to defeat Alan's Big Duo Inferno again in an event. If not met, the attack and powerups will be obtained during stage 58.
*Ending Points +1
**Have Beck's Beck The Great RX3 survive until Alan's Big Duo Inferno is defeated.
'''Unit Acquisition:'''
*Beck The Great RX3 (Beck, T-Bone, Dav)
*Dorothy joins as a sub-pilot for Big O.
*Big O gains the "Big O Final Stage" attack, +1 Movement, and +5 Hit Rate.
'''Unit Acquisition (post-stage):'''
*Mazinger Z, Great Mazinger, Grendizer, and Getter Dragon gain the "Final Dynamic Special" combination attack. Mazinger Z must be piloted by Kouji, and Great Mazinger must be piloted by Tetsuya.
**(Unlike ZAFT route, they will still gain the attack after the stage even if you didn't deploy any of them during the stage, it's just that you will not be able to see the FDS event.)
*King Gainer (Gainer)

|'''Victory Condition:''' [1st half] Defeat the Alexandria; [2nd half] Defeat all enemies.'''Victory Condition (includes hidden):''' [1st half] Defeat the Alexandria, or 3rd turn is reached; [2nd half] Defeat all enemies, or 7th turn is reached. '''Defeat Condition:''' [1st half] Any ally unit is defeated; [2nd half] (1) Ally battleship, Gundam Double X, or G-Falcon is defeated; (2) Ally battleship is defeated. '''SR Point:''' In the second half of the stage, defeat all enemies within 6 turns. '''Secret Requirements:'''
*Biosensor Abilities & Weapons & Powerups for Zeta Gundam [Early] [1st ZAFT route method] (1/1)
**In the second half of the stage, sortie Kamille in the Zeta Gundam. Have Kamille's Zeta Gundam defeat Yazan's Hambrabi. Kamille's Zeta Gundam will use Hyper Beam Sabre to defeat Yazan's Hambrabi again in an event. If not met, the attacks/powerups will be obtained at latest after stage 56.
*Bolinoak Sammahn (Sarah Zabiarov) & Palace Athene (Reccoa) (5/9) + (6/9)
**In the second half of the stage, sortie at least one of the pilots Quattro, Kamille, Fa or Emma in any unit. If not already picked, you also need to sortie at least one of the pilots Kamille or Fa in any unit.
**Have Quattro/Kamille/Fa/Emma's unit battle Reccoa's Palace Athene, and ensure both units survive the battle.
**Have either Kamille or Fa persuade Reccoa. The Persuade special option will only appear for Kamille and Fa after the required battle takes place.
*Ending Points +1
**In the second half of the stage, sortie at least one of the pilots Quattro, Kamille, Fa or Emma in any unit. Have Quattro/Kamille/Fa/Emma's unit battle Reccoa's Palace Athene, and ensure both units survive the battle.
***(All three secret requirements can be achieved by solely sortieing Kamille in the Zeta Gundam.)
*Spirit of Steel (6/6)
**Go to the Bazaar to obtain the Spirit of Steel enhancement part.
'''Unit Acquisition (1st half):'''
*The rest of ZEUTH is unavailable for this stage half.
*Radish (Henken)
*Meyrin rejoins as a sub-pilot of the Eternal.
*Eternal (Lacus, Waltfeld, Meyrin)
'''Unit Acquisition (2nd half):'''
*Radish (Henken)
*Strike Freedom Gundam gains the "METEOR Saber" and "METEOR Full Burst" combination attacks with Eternal. These attacks cannot be used by the Eternal.
*Infinite Justice Gundam gains the "METEOR Saber" and "METEOR Full Burst" combination attacks with Eternal. These attacks cannot be used by the Eternal.
*Zeta Gundam gains the "Beam Saber (Hyper)" and "Waverider Crash" attacks, "Biosensor" and "Psychofield" abilities.
*Gundam Double X (Garrod) and G-Falcon (Paula) become unavailable for the rest of the stage after an event.

|-
| class="fc-route1" |'''{{Ruby|第５０話|だい５０わ}}：{{Ruby|ヒト|人}}の{{Ruby|心|こころ}}, {{Ruby|テンシ|天翅}}の{{Ruby|夢|ゆめ}} Scenario 50 - A Human's Heart, An Angel's Dream'''
| class="fc-route2" |'''{{Ruby|第５０話|だい５０わ}}：{{Ruby|私|わたし}}はＤ．Ｏ．Ｍ．Ｅ．・・・・・・ Scenario 50 - I am D.O.M.E. ......'''

|-
|'''Victory Condition:''' (1) Defeat the Overdevil; (2) Defeat Cherubim Mars or Cherubim Iskulon within 3 turns after they appear; (3) Defeat Gainer B; (4) Defeat the Overdevil.'''Victory Condition (includes hidden):''' (1) Battle any of the following enemies: the Overdevil, Dominator, Gainer B, Jinba, or Golem; alternatively, 3rd turn is reached; (2) Defeat Cherubim Mars or Cherubim Iskulon within 3 turns after they appear; (3) Defeat Gainer B; (4) Defeat the Overdevil. '''Defeat Condition:''' (1) Ally battleship, Emperanza, or Aquarion is defeated; (2) Ally battleship, Emperanza, or Aquarion is defeated, or 4 turns pass after the Shadow Angels appear; (3) Ally battleship or Aquarion is defeated. '''SR Point:''' Defeat all other enemies before defeating the Overdevil. '''Secret Requirements:'''
*Ending Points +1
**Defeat Cherubim Iskulon (Moroha).
***(You must defeat Cherubim Iskulon (Moroha) to achieve the second victory condition, or else you will be unable to get this secret.)
*Ending Points -1
**Defeat Aquarion Alpha (Glenn).
*Ending Points -1
**Do not defeat Cherubim Mars (Sirius).
*Haro (6/6)
**Go to the Bazaar to obtain the Haro enhancement part.
'''Unit Acquisition (pre-deployment intermission):'''
*Panther (Gauli)
*Panther (Sara)
'''Unit Acquisition:'''
*King Gainer (Gainer)
*Jinba (Sara)
**Inherits upgrades from Sara's Panther.
*King Gainer gains the "Overheat" attack, an improved "Overskill" ability, +200 HP, +20 EN, +200 base damage for all existing attacks.
**Overskill : Activates when Oversense Level is at least 6 and 130+ Morale: +10+x Mobility, +10+x Hit Rate (x = Oversense Level × 2), +2 Movement, Shadow(50% chance of full evasion)
*Emperanza gains the "Black Hole" attack.
*Dorbeck (Kejinan)
*Dorbeck (Enge)
*Dorbeck (Jaboli)
*Only Aquarion pilot set E is available for this stage initially. After an event, the pilots are re-organized to pilot set D, and the unit changes to Aquarion Angel.
*Assault Type Aquarion is not available for this stage. (If you obtained it)
'''Unit Acquisition (post-stage):'''
*Dominator (Cynthia)
*Panther (Gauli)
*Panther
*[Bazaar unit] Brockary
*Freeden (Sarah, Tonya, Shingo)
*Iron Gear (Cotset)
*Elche and Fatman become Walker Machine pilots. The following effects take place '''only''' while being pilots.
**Elche's squad leader effect is changed to "PLA weapon attack power +20%".
**Elche can now learn the "Backup Attack" and "Resupply Skill" pilot skills.
**Fatman gains the ability to learn "Guts" and "Drive" spirit commands, the "Damage taken -30%" squad leader effect, and +8 SP. Fatman's pilot statistics are revealed (Melee, Ranged, Skill, Defense, Evade, Hit Rate, Air, Ground, Sea, Space). Fatman can be trained using PP.
*Fatman inherits all PP gained by Elche.

|'''Victory Condition:''' [1st half] Defeat the Alexandria and the Girty Lue within 5 turns; [2nd half] (1) Defeat Gundam Virsago CB or Gundam Ashtaron HC; (2) Defeat Gundam Virsago CB or Gundam Ashtaron HC, and Aquarion Alpha. (3)[Either Gundam Virsago CB or Gundam Ashtaron HC is defeated] Defeat Aquarion Alpha / [Aquarion Alpha is defeated] Defeat Gundam Virsago CB or Gundam Ashtaron HC.'''Victory Condition (includes hidden):''' [1st half] Defeat the Alexandria and the Girty Lue within 5 turns; [2nd half] (1) Battle Gundam Virsago CB or Gundam Ashtaron HC; alternatively, defeat 4 enemy squads; alternatively, 2nd turn reached; (2) Defeat Gundam Virsago CB or Gundam Ashtaron HC, and Aquarion Alpha. (3)[Either Gundam Virsago CB or Gundam Ashtaron HC is defeated] Defeat Aquarion Alpha / [Aquarion Alpha is defeated] Defeat Gundam Virsago CB or Gundam Ashtaron HC. '''Defeat Condition:''' [1st half] Ally battleship, ∀ Gundam, or Aquarion is defeated, or 6th turn reached; [2nd half] (1) Ally battleship is defeated; (2) Ally battleship or Aquarion is defeated. (3)[Aquarion Alpha is defeated] Ally battleship is defeated. '''SR Point:''' In the 1st half of the stage, defeat all enemies within 3 turns. '''Secret Requirements:'''
*(Tiffa)
**Option 1 [Land route Exclusive Method] (1/1)
***By the end of the first half of this stage, obtain at least 4 Tiffa Points. Tiffa will join as a sub-pilot alongside Garrod after the stage.
**Option 2 [Backstop Method] (1/2) + (2/2)
***You are playing as Land and did not meet the conditions for Option 1, or are playing as Setsuko.
***By the end of the first half of this stage, obtain at least 2 Tiffa Points and 40+ SR points. Tiffa will join as a sub-pilot alongside Garrod after the stage.
*G-Bits attack for Gundam X and Gundam Double X
**Option 1 [Land route Exclusive Method] (3/3)
***Go to the Bazaar to obtain the G-Bits attack for both the Gundam Double X and the Gundam X.
**Option 2 [Backstop Method] (1/3) + (2/3) + (3/3)
***You are playing as Land and did not meet the conditions for Option 1, or are playing as Setsuko.
***By the end of the first half of this stage, obtain at least 2 G-Bits Points and '''all 50''' SR points.
***Go to the Bazaar to obtain the G-Bits attack for both the Gundam Double X and the Gundam X.
*Ending Points +1
**In the second half of the stage, defeat both Frost brothers (Gundam Virsago CB (Shagia) and Gundam Ashtaron (Olba)) at the same time.
*Haro (6/6)
**Go to the Bazaar to obtain the Haro enhancement part.
'''Unit Acquisition [1st half]:'''
*Only Aquarion pilot set C is available for this stage half.
'''Unit Acquisition [2nd half]:'''
*∀ Gundam gains the "Moonlight Butterfly" and "Moonlight Butterfly (MAP)" attacks, +400 HP, +40 EN, +5 Hit Rate, +200 base damage for all existing attacks.
*Only Aquarion pilot set C is available for this stage half initially. After an event, the pilots are re-organized to Sylvia/Apollo/Reika, and the unit changes to Aquarion Angel.
*Aquarion Mars & (Sirius)
**Aquarion pilot sets A and C become unavailable.
*Aquarion Mars form is replaced by Aquarion Angel form.
'''Unit Acquisition (post-stage):'''
*Crowda (Lancerow)
*Freeden (Sarah, Tonya, Shingo)
*Iron Gear (Elche, Cotset, Fatman)
**Elche and Fatman return to the Iron Gear.
*(Tiffa)
**Tiffa joins as a sub-pilot alongside Garrod. In addition, Garrod is now able to use weapons that require the Newtype (X) skill.
*Gundam X and Gundam Double X gain the "G-Bits" attack.

|-
| class="fc-route1" |'''{{Ruby|第５１話|だい５１わ}}：{{Ruby|決別|けつべつ}} Scenario 51 - Farewell'''
| class="fc-route2" |'''{{Ruby|第５１話|だい５１わ}}：{{Ruby|紅い|あかい}}{{Ruby|道|みち}} Scenario 51 - The Crimson Path'''

|-
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleship, Destiny Gundam, Legend Gundam, or Impulse Gundam is defeated. '''SR Point:''' Clear the map within 6 turns. '''Secret Requirements:'''
*Biosensor Abilities & Weapons & Powerups for Zeta Gundam [Early] [1st ZEUTH route method] (1/1)
**Sortie Kamille in the Zeta Gundam. Have Kamille's Zeta Gundam defeat Yazan's Hambrabi. Kamille's Zeta Gundam will use Hyper Beam Sabre to defeat Yazan's Hambrabi again in an event. If not met, the attacks/powerups will be obtained at latest after stage 56.
*Bolinoak Sammahn (Sarah Zabiarov) & Palace Athene (Reccoa) (5/9) + (6/9)
**Sortie at least one of the pilots Quattro, Kamille, Fa or Emma in any unit. If not already picked, you also need to sortie at least one of the pilots Kamille or Fa in any unit.
**Have Quattro/Kamille/Fa/Emma's unit battle Reccoa's Palace Athene, and ensure both units survive the battle.
**Have either Kamille or Fa persuade Reccoa. The Persuade special option will only appear for Kamille and Fa after the required battle takes place.
*Ending Points +1
**Sortie at least one of the pilots Quattro, Kamille, Fa or Emma in any unit. Have Quattro/Kamille/Fa/Emma's unit battle Reccoa's Palace Athene, and ensure both units survive the battle.
***(All three secret requirements can be achieved by solely sortieing Kamille in the Zeta Gundam.)
*Gaia Gundam (Stella)
**If the conditions are met, Stella and her Gaia Gundam will join you after the stage.
*Qubeley (Haman)
**Haman and her Qubeley will join you after the stage.
'''Unit Acquisition:'''
*Strike Freedom Gundam (Kira) aka S Freedom Gundam
*Infinite Justice Gundam (Athrun) aka ∞ Justice Gundam
*Akatsuki (Neo) [base unit]
**Oowashi [Exchangeable parts]
**Akatsuki form [using Oowashi parts]
*Archangel (Murrue, Neumann, Chandra)
*Meyrin rejoins as a sub-pilot of the Eternal.
*Eternal (Lacus, Waltfeld, Meyrin)
*Strike Freedom Gundam gains the "METEOR Saber" and "METEOR Full Burst" combination attacks with Eternal. These attacks cannot be used by the Eternal.
*Infinite Justice Gundam gains the "METEOR Saber" and "METEOR Full Burst" combination attacks with Eternal. These attacks cannot be used by the Eternal.
*Zeta Gundam gains the "Beam Saber (Hyper)" and "Waverider Crash" attacks, "Biosensor" and "Psychofield" abilities.
*The only battleships available for this stage are the Argama (Bright) and the Minerva (Talia).
'''Unit Acquisition (post-stage):'''
*Legend Gundam (Rey)
**(Despite the Minerva leaving, the Blaze Zaku Phantom continues to remain in ZEUTH's ranks.)
*Minerva (Talia, Arthur)
*Akatsuki gains the Shiranui exchangeable parts
**Akatsuki form [using Shiranui parts]
*Gaia Gundam (Stella)
*Qubeley (Haman)

|'''Victory Condition:''' (1) Defeat Aquarion Alpha; (2) Defeat any one of the three units Aquarion Alpha or Cherubim Iskulon or Cherubim Mars, and defeat Mecha Yousaiki. '''Defeat Condition:''' Ally battleship or Aquarion is defeated. '''SR Point:''' Clear the map within 5 turns. '''Secret Requirements:'''
*Assault Type Aquarion [Early] (1/2) + (2/2)
**Defeat both Aquarion Omega and Aquarion Delta.
**Purchase the Vector Machine (ベクターマシン) from the Bazaar. The Assault Type Aquarion (Aquarion Alpha/Aquarion Omega/Aquarion Delta) will be obtained immediately. If not met, the unit will be obtained after stage 53.
*Ending Points +1
**Defeat Cherubim Iskulon (Moroha).
***(You must defeat Cherubim Iskulon (Moroha) to achieve the second victory condition, or else you will be unable to get this secret.)
*Ending Points -1
**Defeat Aquarion Alpha (Glenn).
'''Unit Acquisition (post-stage):'''
*King Gainer (Gainer)
*Eureka becomes able to learn the "Wish" spirit command.
*Aquarion Alpha/Aquarion Omega/Aquarion Delta (Only pilot set B: Reika/Jun/Tsugumi) aka Assault Type Aquarion
*[Bazaar unit] Brockary
|-
| class="fc-route1" |'''{{Ruby|第５２話|だい５２わ}}：{{Ruby|黒歴史|くろれきし}}の{{Ruby|真実|しんじつ}} Scenario 52 - The Truth of the Black History'''
| class="fc-route2" |'''{{Ruby|第５２話|だい５２わ}}：ゲインオーバー Scenario 52 - Gain Over'''

|-
|'''Victory Condition:''' [1st half] Defeat the Alexandria and the Girty Lue within 3 turns; [2nd half] Defeat Gundam Virsago CB or Gundam Ashtaron HC. '''Defeat Condition:''' [1st half] Ally battleship, ∀ Gundam, or Gundam Double X is defeated, or 4th turn is reached; [2nd half] Ally battleship or ∀ Gundam is defeated. '''SR Point:''' In the first half of the stage, defeat all other enemies before defeating the Alexandria and the Girty Lue. '''Secret Requirements:'''
*(Tiffa)
**Option 1 [Land route Exclusive Method] (1/1)
***By the end of the first half of this stage, obtain at least 4 Tiffa Points. Tiffa will join as a sub-pilot alongside Garrod at the beginning of the second half of the stage.
**Option 2 [Backstop Method] (1/2) + (2/2)
***You are playing as Land and did not meet the conditions for Option 1, or are playing as Setsuko.
***By the end of the first half of this stage, obtain at least 2 Tiffa Points and 40+ SR points. Tiffa will join as a sub-pilot alongside Garrod at the beginning of second half of the stage.
*G-Bits attack for Gundam X and Gundam Double X
**Option 1 [Land route Exclusive Method] (3/3)
***Go to the Bazaar to obtain the G-Bits attack for both the Gundam Double X and the Gundam X.
**Option 2 [Backstop Method] (1/3) + (2/3) + (3/3)
***You are playing as Land and did not meet the conditions for Option 1, or are playing as Setsuko.
***By the end of the first half of this stage, obtain at least 2 G-Bits Points and '''50+''' SR points. This means you can miss at most two SR Points.
***Go to the Bazaar to obtain the G-Bits attack for both the Gundam Double X and the Gundam X.
*Ending Points +1
**In the second half of the stage, defeat both Frost brothers (Gundam Virsago CB (Shagia) and Gundam Ashtaron (Olba)) at the same time.
*Ending Points +1
**In the second half of the stage, reduce the Turn X (Gym) below 50% HP.
'''Unit Acquisition:'''
*The only battleships available for this stage are the King Beal (Heizaemon), the Argama (Bright), the Archangel (Murrue), and the Eternal (Lacus).
'''Unit Acquisition (2nd half):'''
*(Tiffa)
**Tiffa joins as a sub-pilot alongside Garrod. In addition, Garrod is now able to use weapons that require the Newtype (X) skill.
*∀ Gundam gains the "Moonlight Butterfly" and "Moonlight Butterfly (MAP)" attacks, +400 HP, +40 EN, +5 Hit Rate, +200 base damage for all existing attacks.
'''Unit Acquisition (post-stage):'''
*Crowda (Lancerow)
*Gundam X and Gundam Double X gain the "G-Bits" attack.

|'''Victory Condition:''' (1) Defeat the Overdevil within 9 (Easy) / 8 (Normal) / 7 (Hard) turns; (2) Defeat Jinba; (3) Defeat Gainer B; (4) Defeat the Overdevil within 9 (Easy) / 8 (Normal) / 7 (Hard) turns.'''Victory Condition (includes hidden):''' (1) Defeat Jinba; (2) Defeat Gainer B; (3) Defeat the Overdevil within 9 (Easy) / 8 (Normal) / 7 (Hard) turns. '''Defeat Condition:''' (1) Ally battleship or Emperanza is defeated, or 10th (Easy) / 9th (Normal) / 8th (Hard) turn reached; (2) Ally battleship is defeated, or 10th (Easy) / 9th (Normal) / 8th (Hard) turn reached. '''SR Point:''' Defeat all other enemies, then defeat the Overdevil within 7 (Easy) / 6 (Normal) / 5 (Hard) turns. '''Unit Acquisition (pre-deployment intermission):'''
*Panther (Gauli)
*Panther (Sara)
'''Unit Acquisition:'''
*King Gainer (Gainer)
*Jinba (Sara)
**Inherits upgrades from Sara's Panther.
*King Gainer gains the "Overheat" attack, an improved "Overskill" ability, +200 HP, +20 EN, +200 base damage for all existing attacks.
**Overskill : Activates when Oversense Level is at least 6 and 130+ Morale: +10+x Mobility, +10+x Hit Rate (x = Oversense Level × 2), +2 Movement, Shadow(50% chance of full evasion)
*Emperanza gains the "Black Hole" attack.
*Dorbeck (Kejinan)
*Dorbeck (Enge)
*Dorbeck (Jaboli)
'''Unit Acquisition (post-stage):'''
*Dominator (Cynthia)
*Panther (Gauli)
*Panther
|-
| class="fc-route1" |'''{{Ruby|第５３話|だい５３わ}}：{{Ruby|月面|げつめん}}{{Ruby|決戦|けっせん}} Scenario 53 - Lunar Showdown'''
| class="fc-route2" |'''{{Ruby|第５３話|だい５３わ}}：{{Ruby|歪んだ|ゆがんだ}}{{Ruby|裁き|さばき}} Scenario 53 - Warped Judgement'''

|-
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleships or God Sigma is defeated. '''SR Point:''' Clear the map within 6 turns. '''Secret Requirements:'''
*Spirit of Steel #6
**After the scenario, obtain the Spirit of Steel form the Bazaar
'''Unit Acquisition:'''
*God Sigma Gravion (Sandman)
*God Sigma gains the "Trinity Wing" attack
'''Unit Acquisition (post-stage):'''
*Aquarion Alpha/Aquarion Omega/Aquarion Delta
**If secret wasn't met earlier

|'''Victory Condition:''' (1) Defeat all enemies; (2) Rescue the hostages; (3) Defeat all enemies. '''Defeat Condition:''' (1) Ally battleships or God Sigma is defeated; (2) Ally battleships, God Sigma, or the Elder Battleship is defeated; (3) Ally battleships are defeated. '''SR Point:''' Clear the map within 7 turns. '''Secret Requirements:'''
*Ending Points +1
**Trigger the rescue event by reducing Professor Kazami's Elder Battleship to below 2000 HP
*Big O Final Stage (early)
**Deploy Big O and ensure it is alive when you defeat Big Duo Inferno
*Final Dynamic Special
**Deploy Mazinger Z, Great Mazinger, Grendizer, and Getter Dragon. Kouji and Tetsuya must be in Mazinger Z and Great Mazinger respectively. Ensure they're alive when you destroy the King of Vega or Kagaku Yousaitou
'''Unit Acquisition:'''
*God Sigma Gravion (Sandman)
*God Sigma gains the "Trinity Wing" attack
*Big O gains Dorothy as a sub-pilot
*Big O gains the "Big O Final Stage" attack
*Mazinger Z, Great Mazinger, Grendizer, and Getter Dragon gain the "Final Dynamic Special" combination attack
'''Unit Acquisition (post-stage):'''
*Freeden (Sarah, Tonya, Shingo)
*Iron Gear (Cotset)
**Elche and Fatman become Walker Machine pilots
*Aquarion Alpha/Aquarion Omega/Aquarion Delta
**If secret wasn't met earlier

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第５４話|だい５４わ}}：{{Ruby|魂|たましい}}の{{Ruby|凱歌|がいか}} Scenario 54 - Triumphal Song of the Soul'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleships are defeated. '''SR Point:''' Clear the stage within 6 turns. '''Secret Requirements:'''
*Baldirosier
**If the secret was not met earlier, deploy Baldios and make sure it survives when you destroy the Spirit Gattler
'''Unit Acquisition (pre-deployment intermission):'''
*Eternal (Lacus, Waltfeld, Meylin)
'''Unit Acquisition:'''
*Baldios gains the "Baldirosier" attack
**If secret wasn't met earlier
*Baldios temporarily leaves until the end of the stage after Spirit Gattler is defeated
*God Sigma temporarily leaves until the end of the stage after Gargos is defeated
*God Sigma Gravion (Sandman) leaves after Zeravion is defeated

|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第５５話|だい５５わ}}：{{Ruby|永延|えいえん}}に{{Ruby|耀け|かがやけ}}, {{Ruby|僕ら|ぼくら}}の{{Ruby|星|ほし}}よ Scenario 55 - Shine Forevermore, Our Beloved Planet'''

|-
| colspan="2" |'''Victory Condition:''' [1st half] Defeat Gouma; [2nd half] Defeat Bandock. '''Defeat Condition:''' [1st half] (1) Ally battleships, Sol Gravion, or Zambot 3 is defeated, or Gouma reaches the southern edge of the map; (2) Ally battleships, Sol Gravion, or God Sigma Gravion is defeated, or Gouma reaches the southern edge of the map; [2nd half] Ally battleships are defeated. '''SR Point:''' Defeat all Zeravire enemies, then defeat the Gouma within 5 turns. '''Secret Requirements:'''
*Ending Points +1
**Destroy Gym (retreats once Gouma falls below 50% health)
*Ending Points +1
**Destroy Shagia (retreats once Gouma falls below 50% health)
*Ending Points +1
**Destroy Olba (retreats once Gouma falls below 50% health)
'''Unit Acquisition [1st half]:'''
*God Sigma Gravion (Sandman)
*Eternal (Lacus, Waltfeld, Meyrin)
*Soleil (Diana, Milan)
*Zambot 3
'''Unit Acquisition [post-1st half]:'''
*Sol Gravion and God Sigma Gravion gain the "Choujuu En'ou Zan" combination attack
'''Unit Acquisition [2nd half]:'''
*Zambot 3
'''Unit Acquisition [post-2nd half]:'''
*SUMO Silver Type (Poe)

|- class="fc-route-h"
|'''ZEUTHとして戦う Fight as part of ZEUTH'''
|'''ザフトへ戻る Return to ZAFT'''

|-
| class="fc-route1" |'''{{Ruby|第５６話|だい５６わ}}：{{Ruby|君|きみ}}の{{Ruby|姿|すがた}}, {{Ruby|僕|ぼく}}の{{Ruby|姿|すがた}} Scenario 56 - Your Self, My Self'''
| class="fc-route2" |'''{{Ruby|第５６話|だい５６わ}}：{{Ruby|最後|さいご}}の{{Ruby|力|ちから}} Scenario 56 - The Final Power'''

|-
|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleships are defeated. '''SR Point:''' Clear the map within 7 turns. '''Secret Requirements:'''
*Rey & Talia
** Have both Kira and Shinn fight Rey. Then have Shinn convince Rey, and then have Shinn destroy Rey
*Yzak #3
**Have Athrun convince Yzak
*Sarah & Reccoa #5b
**If you failed to have Katz or Kamille fight Sarah on stage 37, have Kamille convince Sarah
*Sarah & Recooa #6
**Destroy Sarah's unit. Then have Kamille convince Reccoa and leave her alive for the rest of the stage
*Biosensor
**If you failed to meet the requirement earlier, deploy Kamille in the Zeta Gundam and destroy Yazan
'''Unit Acquisition:'''
*Neo becomes Mu
*Zeta Gundam gains the "Beam Saber (Hyper)" and "Waverider Crash" attacks, and the "Biosensor" ability
**If not met earlier
*Strike Freedom Gundam temporarily leaves until the end of the stage after the Minerva is defeated
*All upgrades on Legend Gundam are refunded
**If secret is not met
*All upgrades on Minerva are refunded
**If secret is not met
'''Unit Acquisition (post-stage):'''
*Legend Gundam (Rey)
*Minerva (Talia, Arthur)
*GOUF Ignited (Yzak)
*Bolinoak Sammahn (Sarah)
*Palace Athene (Reccoa)

|'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleships are defeated. '''SR Point:''' Clear the map within 8 turns. '''Secret Requirements:'''
*Ending Points +1
**Destroy Haman
*Ending Points +1
**Have Lacus convince Lunamaria while Shinn is still on the map
*Ending Points -1
**Lunamaria is destroyed
*Yzak #3
**Have Athrun convince Yzak
*Sarah & Reccoa #5b
**If you failed to have Katz or Kamille fight Sarah on stage 37, then have Kamille convince Sarah
*Sarah & Reccoa #6
**Destroy Sarah's unit. Then have Kamille convince Reccoa and leave her alive for the rest of the stage
*Biosensor
**If you failed to meet the requirement earlier, deploy Kamille in the Zeta Gundam and and destroy Yazan
*Stella
**When Stella was destroyed on stage 36, if you had at least 8 Stella Points (or 7 Points and 28+ SR Points), Stella will join after the scenario
'''Unit Acquisition:'''
*Neo becomes Mu
*Zeta Gundam gains the "Beam Saber (Hyper)" and "Waverider Crash" attacks, and the "Biosensor" ability
**If not met earlier
*Strike Freedom Gundam temporarily leaves until the end of the stage after the Minerva is defeated
*All upgrades on Legend Gundam are refunded
*All upgrades on Minerva are refunded
'''Unit Acquisition (post-stage):'''
*Destiny Gundam (Shinn)
*Impulse Gundam (Lunamaria)
*GOUF Ignited (Yzak)
*Gaia Gundam (Stella)
*Bolinoak Sammahn (Sarah)
*Palace Athene (Reccoa)

|-
| class="fc-route1" |'''{{Ruby|第５７話|だい５７わ}}：{{Ruby|終末|しゅうまつ}}の{{Ruby|光|ひかり}} Scenario 57 - Climactic Light'''
| class="fc-route2" |'''{{Ruby|第５７話|だい５７わ}}：{{Ruby|星|ほし}}に{{Ruby|願い|ねがい}}を Scenario 57 - Wish Upon a Star'''

|-
|'''Victory Condition:''' (1) Defeat Nirvash theEND; (2) Defeat Nirvash theEND, Gundam Virsago CB, Gundam Ashtaron HC, Turn X, and Cherubim Mars; (3) Defeat the Gingagou within 3 turns. '''Defeat Condition:''' (1) Ally battleships, Aquarion, or Assault-type Aquarion is defeated; (2) Ally battleships, Aquarion, or Assault-type Aquarion is defeated, or 3 turns pass. '''SR Point:''' Achieve the second victory condition within 6 turns. '''Secret Requirements:'''
*Ending Points +1
**Destroy both Otoha and Touma
'''Unit Acquisition:'''
*Sirius and Rena join as pilots of Aquarion and Assault-type Aquarion respectively
*Aquarion Angel -> Aquarion Mars
*Solar Aquarion gains the "Taiyouken" attack
'''Unit Acquisition (post-stage):'''
*(Eureka)
*Freeden (Sara, Tonya, Shingo)
*Iron Gear (Elche, Cotset, Fatman)
**Elche and Fatman return to the Iron Gear
|'''Victory Condition:''' (1) Defeat Cherubim Mars; (2) Defeat Cherubim Mars, Gundam Virsago CB, Gundam Ashtaron HC, and Turn X; (3) Defeat Cherubim Mars, Gundam Virsago CB, Gundam Ashtaron HC, Turn X, and Nirvash theEND; (4) Defeat the Gingagou. '''Defeat Condition:''' Ally battleships, Aquarion, Assault-type Aquarion, or ∀ Gundam is defeated. '''SR Point:''' Clear the map within 8 turns. '''Secret Requirements:'''
*Ending Points +1
**Destroy both Otoha and Touma
'''Unit Acquisition:'''
*Sirius and Rena join as pilots of Aquarion and Assault-type Aquarion respectively
*Aquarion Angel -> Aquarion Mars
*Solar Aquarion gains the "Taiyouken" attack
'''Unit Acquisition (post-stage):'''
*(Eureka)
*Freeden (Sara, Tonya, Shingo)
*Iron Gear (Elche, Cotset, Fatman)
**Elche and Fatman return to the Iron Gear
|-
| colspan="2" class="fc-std-sc" |'''{{Ruby|第５８話|だい５８わ}}：メモリーズ Scenario 58 - Memories'''
|-
| colspan="2" |'''Victory Condition:''' (1) Defeat Big Fau; (2) After the enemy Big units arrive, have Big O reach the marked point within 5 turns. '''Defeat Condition:''' (1) Big O is defeated; (2) Ally battleships or Big O is defeated; (3) Ally battleships or Big O is defeated, or 5 turns pass after the enemy Big units arrive. '''SR Point:''' Defeat all enemies before having Big O reach the marked point. '''Secret Requirements:'''
*Ending Points -15
**Choose "Abandon your memories and live in Paradigm City" (メモリーを捨て、シティで生きていく)
*Chaos Caper (Ziene) & Shurouga (Asakim) #1
**Have at least 15 Ending Points, or 7 Ending Points and 46+ SR points
'''Unit Acquisition:'''
*Big O gains the "Big O Final Stage" attack
**If secret was not met earlier
|} 

==Stages 59 - END==
{| width="70%"
|- class="fc-route-h"
| colspan="2" width="50%" |'''Setsuko Route'''
| colspan="3" width="50%" |'''Land Route'''

|-
| colspan="2" class="fc-route3" |'''{{Ruby|第５９話|だい５９わ}}：{{Ruby|黒|くろ}}の{{Ruby|世界|せかい}} Scenario 59 - World in Black'''
| colspan="3" class="fc-route4" |'''{{Ruby|第５９話|だい５９わ}}：{{Ruby|塗り潰される|ぬりつぶされる}}{{Ruby|明日|あした}} Scenario 59 - Overpainted Tomorrow'''

|-
| colspan="2" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleships are defeated. '''SR Point:''' Clear the stage within 7 turns. '''Secret Requirements:'''
*Chaos Caper (Ziene) #2
**Have any character fight Ziene, then have Setsuko fight Ziene. Then have Setsuko convince Ziene. Then destroy her with any unit
'''Unit Acquisition (post-stage):'''
*Chaos Caper (Ziene)
'''List of endings'''
*'''Bad Ending (Black History)'''
The Black History repeats itself, and the world once again enters a never-ending cycle of war.
:* '''#0''' - This requires you to have 7 or fewer Ending Points.
:* '''#1''' - When prompted on scenario 59, say you can't decide on your own (自分では決められない).
:* '''#2''' - If conditions are met, you will get the Black History Ending.
*'''Normal Ending (Unstable World)'''
The world still remains unstable, but its destruction is averted.
:* '''#0''' - This requires you to have 7 or fewer Ending Points.
:* '''#1''' - When prompted on scenario 59, say you wish for the world to stabilize (世界の安定を望む).
:* '''#2''' - If conditions are met, you will get the Unstable World Ending.
*'''Good Ending (Somewhat Stable World)'''
The world is now somewhat stable.
:* '''#0''' - This requires you to have from 8 to 17 Ending Points.
:* '''#1''' - If conditions are met, you will get the Somewhat Stable World Ending. Your choices in scenario 59 would not affect the ending.
*'''Best Ending 1 (Completely Stable World)'''
The world is now fully stabilized. This is considered as the canon history that would lead to Z2.
:* '''#0''' - This requires you to have 18 or more Ending Points.
:* '''#1''' - When prompted on scenario 59, say you wish for the world to stabilize (世界の安定を望む).
:* '''#2''' - If conditions are met, you will get the Completely Stable World Ending.
*'''Best Ending 2 (Restored World)'''
The world is restored to its state before the Break The World incident. The UCW world is split back into the various dimensions which previously merged into it. Everyone returns to their respective worlds.
:* '''#0''' - This requires you to have 18 or more Ending Points.
:* '''#1''' - When prompted on scenario 59, say you wish for everything to be restored as before (全てが元通りになるのを望む).
:* '''#2''' - If conditions are met, you will get the Restored World Ending.

| colspan="3" |'''Victory Condition:''' Defeat all enemies. '''Defeat Condition:''' Ally battleships are defeated. '''SR Point:''' Clear the stage within 7 turns. '''Secret Requirements:'''
*Chaos Caper (Ziene) & Shurouga (Asakim) #2
**Have any character fight Ziene, then have Land fight Ziene. Then have Land convince Ziene. Then destroy her with any unit
'''Unit Acquisition (post-stage):'''
*Chaos Caper (Ziene)
'''List of endings'''
*'''Bad Ending (Black History)'''
The Black History repeats itself, and the world once again enters a never-ending cycle of war.
:* '''#0''' - This requires you to have 7 or fewer Ending Points.
:* '''#1''' - When prompted on scenario 59, say you can't decide on your own (自分では決められない).
:* '''#2''' - If conditions are met, you will get the Black History Ending.
*'''Normal Ending (Unstable World)'''
The world still remains unstable, but its destruction is averted.
:* '''#0''' - This requires you to have 7 or fewer Ending Points.
:* '''#1''' - When prompted on scenario 59, say you wish for the world to stabilize (世界の安定を望む).
:* '''#2''' - If conditions are met, you will get the Unstable World Ending.
*'''Good Ending (Somewhat Stable World)'''
The world is now somewhat stable.
:* '''#0''' - This requires you to have from 8 to 17 Ending Points.
:* '''#1''' - If conditions are met, you will get the Somewhat Stable World Ending. Your choices in scenario 59 would not affect the ending.
*'''Best Ending 1 (Completely Stable World)'''
The world is now fully stabilized. This is considered as the canon history that would lead to Z2.
:* '''#0''' - This requires you to have 18 or more Ending Points.
:* '''#1''' - When prompted on scenario 59, say you wish for the world to stabilize (世界の安定を望む).
:* '''#2''' - If conditions are met, you will get the Completely Stable World Ending.
*'''Best Ending 2 (Restored World)'''
The world is restored to its state before the Break The World incident. The UCW world is split back into the various dimensions which previously merged into it. Everyone returns to their respective worlds.
:* '''#0''' - This requires you to have 18 or more Ending Points.
:* '''#1''' - When prompted on scenario 59, say you wish for everything to be restored as before (全てが元通りになるのを望む).
:* '''#2''' - If conditions are met, you will get the Restored World Ending.

|- class="fc-route-h"
| colsapn="3" width="33%" |'''Setsuko Good Ending'''
| colspan="2" width="34%" |'''Bad Ending (Not enough [[Super_Robot_Wars/Z/Secrets#EndingPoints|Ending Points]])'''
| width="33%" |'''Land Good Ending'''

|-
| class="fc-route3" |'''{{Ruby|最終話|さいしゅうわ}}：{{Ruby|私|わたし}}の{{Ruby|未来|みらい}}、{{Ruby|みんな|皆}}の{{Ruby|未来|みらい}} Final Scenario - My Future, Everyone's Future'''
| colspan="2" class="fc-prologue" |'''{{Ruby|最終話|さいしゅうわ}}：{{Ruby|果て無き|はてなき}}{{Ruby|戦い|たたかい}}の{{Ruby|環|たまき}}へ Final Scenario - Into an Endless Cycle of War'''
| class="fc-route4" |'''{{Ruby|最終話|さいしゅうわ}}：{{Ruby|俺|おれ}}の{{Ruby|未来|みらい}}、{{Ruby|お前|おまえ}}の{{Ruby|未来|みらい}} Final Scenario - My Future, Your Future'''

|-
|'''Victory Condition:''' [1st half] Defeat Lemures; [2nd half] (1) Have Nirvash spec3 reach the marked point within 5 turns; (2) Defeat Chaos Lemures. '''Defeat Condition:''' [1st half] (1) Ally battleships are defeated, or Lemures reaches the marked area; (2) Ally battleships or Nirvash spec3 is defeated, or Lemures reaches the marked area; [2nd half] (1) Ally battleships or Nirvash spec3 is defeated, or 5 turns pass; (2) Ally battleships are defeated. '''Unit Acquisition [1st half]:'''
*'''Deployed Battleships:'''
**King Beal
**Groma
**Iron Gear
**Freeden
**Soleil
*Nirvash spec2 -> Nirvash spec3
*Renton gains +5 points for Ranged and Melee stats, +10 points for all other stats.
*Nirvash theEND (Anemone)
*Federation Army Aerial Battleship (Jurgens, Dominic)
*Golem (Astham)
*Dorbeck (Kejinan)
*Dorbeck (Enge)
'''Unit Acquisition [2nd half]:'''
*'''Deployed Battleships:'''
**Argama
**Archangel
**Eternal
**Minerva
**Gekkougou
*Eureka joins as a sub-pilot for Nirvash spec3

| colspan="2" |'''Victory Condition:''' Defeat Lemures. '''Defeat Condition:''' Ally battleships are defeated.

|'''Victory Condition:''' [1st half] Defeat Lemures; [2nd half] (1) Have Nirvash spec3 reach the marked point; (2) Defeat the 3 Chaos Lemures units within the same turn. '''Defeat Condition:''' [1st half] (1) Ally battleships are defeated, or Lemures reaches the marked area; (2) Ally battleships or Nirvash spec3 is defeated, or Lemures reaches the marked area; [2nd half] (1) Ally battleships or Nirvash spec3 is defeated; (2) Ally battleships are defeated. '''Secret Requirements:'''
*Shurouga (Asakim) #3
**If Ziene is recruited, have Land destroy Asakim during the first part of the stage
'''Unit Acquisition [1st half]:'''
*'''Deployed Battleships:'''
**King Beal
**Groma
**Iron Gear
**Freeden
**Soleil
*Nirvash spec2 -> Nirvash spec3
*Renton gains +5 points for Ranged and Melee stats, +10 points for all other stats.
*Nirvash theEND (Anemone)
*Federation Army Aerial Battleship (Jurgens, Dominic)
*Golem (Astham)
*Dorbeck (Kejinan)
*Dorbeck (Enge)
*[Secret] Spearhead (Charles)
*[Secret] Spearhead (Ray)
'''Unit Acquisition [2nd half]:'''
*'''Deployed Battleships:'''
**Argama
**Archangel
**Eternal
**Minerva
**Gekkougou
*Eureka joins as a sub-pilot for Nirvash spec3
*Shurouga (Asakim)
|}